Gene PalZAT10-1 for improving abiotic stress tolerance of plants and application thereof
阅读说明：本技术 一种提高植物非生物胁迫耐受性的基因PalZAT10-1及其应用 (Gene PalZAT10-1 for improving abiotic stress tolerance of plants and application thereof ) 是由 万东石 白秋仙 刘建全 柳易欣 吴桂莉 于 2021-09-08 设计创作，主要内容包括：本发明属于分子克隆与基因工程领域,具体涉及一种提高植物非生物胁迫耐受性的基因PalZAT10-1及其应用。所述基因PalZAT10-1定位于细胞核,在新疆杨中过表达基因PalZAT10-1,能促进植物分支,根系发育和气孔关闭,提高抗氧化活性,光合速率和水分利用效率；在新疆杨中敲除PalZAT10-1基因获得的palzat10-1lines,其表型则与PalZAT10-1OE lines完全相反；该基因对于预防植物水分损失,培养优良抗逆树种方面具有重要的意义,为促进我国对杨树树木资源的深入研究和开发利用奠定基础。(The invention belongs to the field of molecular cloning and genetic engineering, and particularly relates to a gene PalZAT10-1 for improving abiotic stress tolerance of plants and application thereof. The gene PalZAT10-1 is positioned in cell nucleus, and the gene PalZAT10-1 is over-expressed in populus Sinkiangensis, so that the plant branches, root development and stomata closure can be promoted, and the antioxidant activity, the photosynthetic rate and the water utilization efficiency are improved; PalZAT10-1lines obtained by knocking out PalZAT10-1 gene in Xinjiang poplar, wherein the phenotype is completely opposite to that of PalZAT10-1OE lines; the gene has important significance for preventing water loss of plants and culturing excellent stress-resistant tree species, and lays a foundation for promoting deep research and development and utilization of poplar tree resources in China.)
1. A gene PalZAT10-1 for improving abiotic stress tolerance of plants is characterized in that the nucleotide sequence of the gene PalZAT10-1 is shown as SEQ ID NO. 1.
2. An expression vector comprising the gene PalZAT10-1 of claim 1.
3. The expression vector of claim 2, wherein the expression vector comprises a pichia pastoris expression vector, a binary agrobacterium vector, a vector for plant microprojectile bombardment.
4. The expression vector of claim 3, wherein the expression vector comprises pPIC9K, pCXSN, pYRCISPR/Cas 9-DH, pCXDG.
5. A cell line and/or host bacterium comprising the gene PalZAT10-1 of claim 1.
6. Use of the gene PalZAT10-1 according to claim 1 for promoting plant growth.
7. Use of the gene PalZAT10-1 according to claim 1 for increasing abiotic stress tolerance in plants.
8. The use of claim 7, wherein the abiotic stress tolerance comprises high salt stress tolerance, drought stress tolerance, osmotic stress tolerance, oxidative stress tolerance.
9. Use according to claim 7 or 8, wherein the plant is a woody plant.
10. A protein PalZAT10-1 encoded by the gene PalZAT10-1 of claim 1, wherein the amino acid sequence of the protein PalZAT10-1 is shown in SEQ ID No. 2.
Technical Field
The invention belongs to the field of molecular cloning and genetic engineering, and particularly relates to a gene PalZAT10-1 for improving abiotic stress tolerance of plants and application thereof.
Background
Abiotic stress is a major cause of crop losses worldwide, reducing average yield by more than 50% for major crop plants, causing losses worth millions of dollars each year. Abiotic stress results in a series of morphological, physiological, biochemical and molecular changes that adversely affect plant growth and yield. Abiotic stresses include high salt stress, drought stress, osmotic stress, oxidative stress, intense light stress, low temperature stress, and the like. Among them, soil water deficit caused by drought and high salinity is the most important environmental stress, which severely limits the growth, yield and distribution of plants. High salinity, especially sodium ion (Na)+) It can dissipate membrane potential, is toxic to cellular metabolism, and has deleterious effects on the functioning of enzymes in some plants. In addition, high concentration of Na+Cause osmotic imbalance, membrane tissue destruction, reduced growth, inhibition of cell division/expansion, can lead to reduced photosynthesis and production of reactive oxygen species; drought conditions disrupt the normal membrane bilayer structure, and in addition to membrane damage, cytosolic and organelle proteins may exhibit reduced activity or even undergo complete denaturation when dehydrated, and drought may also cause the cells to metabolically collapse and reduce vegetative growth, especially shoot growth.
Plants can respond positively to water deficit at multiple levels, for example, plants can regulate stomatal pore size to reduce transpiration; among them, Transcription Factors (TF), such as HD-Zip (OsTF1L), GATA (PdGNC) in rice, bZIPs (ABFs) in poplar, phytohormones, such as ABA, ethylene and Jas; ca2+Both signaling and MAPK protein kinases associated with the ABA hormone signaling pathway are involved in plant enhancement of stress tolerance by modulating stomatal closure; in addition, signaling molecules, including H accumulated in guard cells2O2NO and H2And S, also participating in regulating the movement of the stomata. Although such stomatal movement studies in response to drought stress have been conducted very muchFor a long time, the overall signal transduction pathway remains unclear.
The C2H2 protein belongs to the Zinc Finger Protein (ZFP) TF family and plays an important role in morphogenesis, transcriptional activation and stress response. The C2H2-ZFP comprises a zinc finger consisting of approximately 30 amino acids with the conserved sequence X2-CX (2-4) -CX12-HX (2-8) -H (X represents any amino acid). In the plant genome, C2H 2-ZFPs undergo extensive lineage specific amplification or contraction and contain a particularly conserved QALGGH motif and specific DNA binding domains that are phenotypically diverse and environmentally adaptable in plants. C2H 2-ZFPs represent an important class of eukaryotic TFs identified from petunia, soybean, arabidopsis, rice and potato. In petunia, ZPT2-3 is up-regulated under drought and cold stress, and its overexpression can enhance the tolerance of plants to drought stress; ZFP252 in rice has been shown to be involved in maintaining homeostasis of intracellular osmotic pressure and enhancing salt and drought stress tolerance; GsZFP1 in glycine soybean overexpressing lines was also associated with small stomata and impaired ABA-induced stomatal closure; constitutive expression of ZAT10 in arabidopsis increases the tolerance of plants to osmotic, salinity and heat stress; in addition, as a positive TF in arabidopsis, STZ/ZAT10 can be phosphorylated by mitogen-activated protein kinase 3/6(MPK3/6) to enhance osmotic stress tolerance. These results indicate that the zinc fingers of C2H2 type are involved in various stress responses of salinity, low temperature, intense light and extensive oxidation in plants. However, the identification and function of C2H2-ZFP in woody plants has been less studied.
Sinkiang poplar (Populus alba var. pyramidalis) is a variety of poplar (Populus alba var. alba), only male. Because of the characteristics of fast growth, lack of flocculent seeds, upright stem, high biomass and the like, the fertilizer is widely cultivated and used for urban greening, ecological restoration and wood utilization. In northern China, Xinjiang poplars can be cultivated from Xinjiang to Beijing. Previous studies have shown that this variety is obtained by selecting, domesticating and cloning one or more individual male aspens distributed in mid-arid regions. The Sinkiang poplar is always planted by artificial cuttage and easy to survive, so that the Sinkiang poplar can be propagated in a large scale; meanwhile, the Xinjiang poplars grow in the northwest region and have certain tolerance to salt and drought stress.
The PalZAT10-1 gene is separated from the genome of Xinjiang poplar; meanwhile, the PalZAT10-1 gene after salt treatment of Xinjiang poplar is found to be obviously up-regulated in root, xylem and leaf; secondly, researches on transgenic technology and knockout technology show that the over-expressed PalZAT10-1 gene of Xinjiang poplar has the effects of improving the activity of peroxidase, improving photosynthesis and increasing H with proper concentration under the stress of water deficiency2O2The content of the transgenic Xinjiang poplar is increased, the relative water content is increased, the electrolyte leakage is reduced, the malondialdehyde content is reduced, the air hole conductivity is reduced, and the like, so that the transgenic Xinjiang poplar has the excellent quality of developed root system, more branches, reduced water loss, closed air holes and improved salt resistance and drought resistance. Has important significance for promoting the deep research, development and utilization of poplar tree resources in China.
Disclosure of Invention
In a first aspect, the invention provides a gene PalZAT10-1 for improving abiotic stress tolerance of plants, wherein the nucleotide sequence of the gene PalZAT10-1 is shown as SEQ ID NO. 1.
In a second aspect, the present invention provides an expression vector comprising the gene PalZAT10-1 of the first aspect.
Preferably, the expression vector comprises a pichia pastoris expression vector, a binary agrobacterium vector and a vector which can be used for plant microprojectile bombardment.
Preferably, the pichia pastoris expression vector can be used as a vector for yeast LiCl transformation.
Preferably, the vector for transformation of yeast LiCl is pPIC9K, and after carrying the gene PalZAT10-1 of the first aspect, the vector is transformed into yeast cells by LiCl, conductance and other conventional biological methods, the steps are as follows:
(1) respectively connecting the gene PalZAT10-1 to an expression vector pPIC9K by an enzyme digestion connection method, transforming the gene into escherichia coli DH5 alpha competent cells, and preliminarily screening escherichia coli DH5 alpha transformed and connected with the pPIC9K vector of PalZAT10-1 by 50mg/L ampicillin to obtain a positive clone;
(2) further selecting a single clone, amplifying by PCR, and carrying out sequencing verification to finally obtain a positive strain of the expression vector fused with the PalZAT10-1 gene;
(3) and (3) extracting successfully connected plasmids from the positive strains obtained in the step (2), converting the plasmids into competent pichia pastoris GS115, and primarily screening positive clone strains through 1mg/mL geneticin.
Preferably, the vector for plant microprojectile bombardment is pCXSN, pYLCRISPR/Cas9-DH and pCXDG, and after the vector carries the gene PalZAT10-1 described in the first aspect, the vector is transformed into plant cells or tissues by conventional biological methods such as Ti plasmid, Ri plasmid, plant virus vector, direct DNA transformation, microinjection, conductance, Agrobacterium mediation and the like.
In a third aspect, the present invention provides a cell line and a host bacterium comprising the gene PalZAT10-1 of the first aspect.
In a fourth aspect, the invention provides the use of the gene PalZAT10-1 in the first aspect for promoting plant growth, wherein the gene can promote plant branch and root growth.
In a fifth aspect, the invention provides a use of the gene PalZAT10-1 in the first aspect for improving abiotic stress tolerance of plants; the gene PalZAT10-1 can improve the activity of antioxidant enzyme; increasing the relative water content; improving the photosynthesis ability; reducing the conductance of the air holes; reducing the content of malondialdehyde; increase H2O2Content (c); enhancing the stress resistance of the plants.
Preferably, the abiotic stress tolerance includes high salt stress tolerance, drought stress tolerance, osmotic stress tolerance, oxidative stress tolerance.
Preferably, the plant is a woody plant.
Preferably, the woody plant includes Sinkiang poplar, Chinese white poplar, populus diversifolia, cornus officinalis, beech, mahogany, walnut, oak, ash, willow, hickory, birch, chestnut, poplar, alder, aspen, maple, sycamore, ginkgo, palm, sweetgum, cypress, douglas fir, redwood, hemlock, cedar, juniper, larch, pine, redwood, spruce, yew.
Preferably, the woody plant is populus Sinkiangensis.
In a sixth aspect, the invention provides a method for constructing over-expressed Xinjiang poplar seedling-raising seedlings containing the gene PalZAT10-1 and knockout Xinjiang poplar seedling-raising seedlings containing the Cas9 target spot of the gene PalZAT10-1, which comprises the following steps:
(1) the gene PalZAT10-1 and the Cas9 knockout target of the selected PalZAT10-1 gene are respectively connected to an overexpression vector pCXSN and a knockout vector pYLCRISPR/Cas9-DH binary expression vector by an enzyme digestion connection method, transformed into an escherichia coli DH5 alpha competent cell, and preliminarily screened by 50mg/L kanamycin to obtain a positive clone;
(2) further selecting a single clone, amplifying by RCR, sequencing and verifying to finally obtain a positive strain of the overexpression vector fused with the PalZAT10-1 gene;
(3) extracting successfully connected plasmids from the positive strains obtained in the step (2), transforming the successfully connected plasmids into competent agrobacterium GV3101, and primarily screening positive clone strains through 50mg/L kanamycin, 50mg/L rifampicin and 50mg/L gentamicin;
(4) and (3) selecting the positive monoclonal strain obtained in the step (3), performing RCR amplification and sequencing verification to finally obtain a successfully transformed agrobacterium GV3101 positive strain for infecting Xinjiang poplar, and finally obtaining PalZAT10-1OE lines as over-expressed positive seedlings of Xinjiang poplar and PalZAT10-1lines as knock-out positive seedlings of Xinjiang poplar.
In a seventh aspect, the invention provides a protein PalZAT10-1 encoded by the gene PalZAT10-1 of the first aspect, wherein the amino acid sequence of the protein PalZAT10-1 is shown in SEQ ID NO. 2.
The invention has the beneficial effects that: the invention discloses a PalZAT10-1 gene of Xinjiang poplar, which is separated from the Xinjiang poplar gene, widely exists in the northern China and can improve the water stress tolerance of plants, and the PalZAT10-1 gene is positioned in cell nucleus; the overexpression of the gene PalZAT10-1 in the populus Sinkiangensis can improve the activity of peroxidase, improve photosynthesis and improve the H with proper concentration2O2Content, increase relative water contentThe method has the functions of reducing electrolyte leakage, reducing malonaldehyde content, reducing air hole conductivity and the like, and enables the transgenic Xinjiang poplar to have the advantages of developed root system, more branches, reduced water loss, closed air holes and improved salt resistance and drought resistance. The discovery of the gene has important theoretical and practical significance for promoting the deep research, development and utilization of poplar tree resources in China.
Drawings
FIG. 1 identification of PalZAT10-1 gene of Xinjiang poplar, wherein a is a phylogenetic tree; b is the result of chromosome location and collinearity analysis; c is the result of amino acid sequence comparison analysis;
FIG. 2 shows the results of analyzing elements of upstream promoter region of PalZAT10-1 gene in Xinjiang poplar;
FIG. 3 analysis of salt tolerance of PalZAT10-1 gene (PAYT007874.1) in Xinjiang poplar, wherein a is the expression pattern of 20 PalZAT10s genes containing two C2H2 domains at the same time in different tissues after salt stress treatment of Xinjiang poplar; b is the relative expression level of PalZAT10-1 gene in wild type Xinjiang poplar treated by NaCl with different concentrations; c, detecting the salt tolerance of the transgenic GS115 yeast under different salt gradients;
FIG. 4 is a schematic diagram of an expression vector constructed in the manner that a is a schematic diagram of a pPIC9K yeast expression vector; b is a schematic diagram of an expression vector fused with green fluorescent protein GFP; c is a schematic diagram of a pCXSN overexpression vector; d is a schematic diagram of pYLCRISPR/Cas9-DH knockout vector;
FIG. 5 subcellular localization of PalZAT10-1 protein in Xinjiang poplar;
FIG. 6 shows that stress tolerance PalZAT10-1 gene of Sinkiang poplar overexpresses transgenic Sinkiang poplar, Cas9 knock-out genes of Sinkiang poplar and wild type Sinkiang poplar WT; wherein a is the tissue culture seedling and rooting condition of transgenic Xinjiang poplar (PalZAT10-1OE) with PalZAT10-1 gene overexpression, wild type Xinjiang poplar (WT) and Cas9 knockout gene Xinjiang poplar (PalZAT 10-1); b is the anther culture of two strains PalZAT10-1 OEline 1 and PalZAT10-1 OEline 4 of Xinjiang poplar with stress tolerance PalZAT10-1 gene overexpression, two strains PalZAT10-1line 3 and PalZAT10-1line 11 of Cas9 knockout genes of Xinjiang poplar and wild type Xinjiang poplar WT; c is relative quantitative PCR analysis of PalZAT10-1OE and PalZAt 10-1;
FIG. 7 measurement of relevant physiological indexes of transgenic Xinjiang poplar (PalZAT10-1OE) with PalZAT10-1 gene overexpression, wild type Xinjiang poplar (WT) and Cas9 knockout gene Xinjiang poplar (PalZAT10-1) under salt and osmotic stress; wherein a is the phenotypic difference between WT, PalZAT10-1OE and Palzat10-1 after 3 days of 200mM NaCl treatment; b is stress related physiological indexes of photosynthetic pigments of WT, PalZAT10-1OE and PalZAt10-1 leaves after 200mM NaCl treatment for 3 days; c is a quantitative measure of Electrolyte Leakage (EL) of WT, PalZAT10-1OE, and Palzat10-1 after 7 days of 75mM NaCl treatment; d Malondialdehyde (MDA) content analysis of WT, PalZAT10-1OE and Palzat10-1 after 7 days of 75mM NaCl treatment; e proline (Pro) content analysis for WT, PalZAT10-1OE and Palzat10-1 after 7 days of 75mM NaCl treatment; f hydrogen peroxide (H) of WT, PalZAT10-1OE and PalZAT10-1 after 7 days of 75mM NaCl treatment2O2) Horizontal analysis; g Activity analysis of superoxide dismutase (SOD) with WT, PalZAT10-1OE and Palzat10-1 after 7 days of 75mM NaCl treatment; h Peroxidase (POD) activity assay of WT, PalZAT10-1OE and Palzat10-1 after 7 days of 75mM NaCl treatment; i is H in WT, PalZAT10-1OE and PalZAT10-1 as measured by histochemical staining with DAB after 3 days of treatment with purified water and 200mM NaCl, respectively2O2The in situ accumulation condition of (a); j is the analysis of the MDA content of WT, PalZAT10-1OE and PalZAT10-1 after 7 days of 150mM Sorbitol simulated osmotic treatment; analysis of Pro content by WT, PalZAT10-1OE and PalZAT10-1 after 7 days of osmotic treatment with k 150mM Sorbitol simulant; l is H in WT, PalZAT10-1OE and PalZAT10-1 after 7 days of 150mM Sorbitol simulated osmotic treatment2O2Horizontal analysis; SOD activity analysis in WT, PalZAT10-1OE and PalZAt10-1 after 7d of m is 150mM Sorbitol simulated penetration treatment; n is POD activity assay in WT, PalZAT10-1OE and PalZAT10-1 after 150mM Sorbitol simulated permeation for 7 d;
FIG. 8 observation of stomata opening and closing of transgenic Xinjiang poplar (PalZAT10-1OE) with PalZAT10-1 gene overexpression, wild-type Xinjiang poplar (WT), and Cas9 knockout gene Xinjiang poplar (PalZAT10-1) under salt stress, wherein a is stomata opening and closing result captured by Scanning Electron Microscope (SEM) in leaves of WT, PalZAT10-1OE, and PalZAT10-1 after treatment with 200mM NaCl for 7 days; b, measuring the length and the width by using Image J software, and carrying out an area analysis result according to the measured values of the length and the width;
FIG. 9 is a diagram showing the observation of the open and close of air pores of transgenic Xinjiang poplar (PalZAT10-1OE) with PalZAT10-1 gene overexpression, wild type Xinjiang poplar (WT) and Cas9 knockout gene Xinjiang poplar (PalZAT10-1) under ABA stress; wherein a-b is the stomatal closure condition and the corresponding statistical result after the poplar seedlings are treated by 5M ABA for 0, 1.5 and 3 hours; c staining for DAB showed that 150M ABA induced H in leaves of WT, PalZAT10-1OE and Palzat10-1 at different times2O2Generating a condition;
FIG. 10 measurement of the phenotype associated with transgenic Sinkiang poplar with PalZAT10-1 gene overexpression (PalZAT10-1OE), wild-type Sinkiang poplar (WT), and Cas9 knockout gene Sinkiang poplar (PalZAT10-1) under short-term drought stress, wherein a is the morphological difference after short-term drought treatment; b is qRT-PCR which verifies the expression level of PalZAT10-1 gene after drought treatment for 0, 3, 6, 9 and 12 h; c is a measurement of the Relative Water Content (RWC) of the leaves of WT, PalZAT10-1OE, PalZAt10-1 under normal and 5 day drought stress conditions; d is the stomatal conductance (Gs) -drought time curve of the leaves under normal and drought stress conditions of 2-5 days for WT, PalZAT10-1OE, and PalZAT 10-1; e is the net photosynthetic rate (Pn) -drought time curve of the leaves under normal and 2-5 days drought stress conditions for WT, PalZAT10-1OE, Palzat 10-1; f is the transpiration rate (Tr) -drought time curve of the leaves under normal and 2-5 days drought stress conditions for WT, PalZAT10-1OE, PalZAT 10-1; g is the Water Use Efficiency (WUE) -drought time curve of the leaves under normal and 2-5 days drought stress conditions for WT, PalZAT10-1OE, PalZAT 10-1;
FIG. 11 measurement of relevant physiological indicators of transgenic Xinjiang poplar with PalZAT10-1 gene overexpression (PalZAT10-1OE), wild-type Xinjiang poplar (WT) and Cas9 knockout gene Xinjiang poplar (PalZAT10-1) under drought stress, wherein a is quantitative measurement of Electrolyte Leakage (EL) of WT, PalZAT10-1OE and PalZAT10-1 under normal conditions and after 5 days of drought treatment; b is Malondialdehyde (MDA) content analysis of WT, PalZAT10-1OE and Palzat10-1 under normal conditions and after drought treatment for 5 days; c is proline (Pro) content analysis of WT, PalZAT10-1OE and Palzat10-1 under normal conditions and after drought treatment for 5 days; d is WT under normal conditions and after 5 days of drought treatment,Hydrogen peroxide (H) of PalZAT10-1OE and PalZAt10-12O2) Horizontal analysis; e is the activity analysis of superoxide dismutase (SOD) of WT, PalZAT10-1OE and PalZAt10-1 under normal conditions and after drought treatment for 5 days; f is the Peroxidase (POD) activity assay of WT, PalZAT10-1OE and Palzat10-1 under normal conditions and after 5 days of drought treatment.
Detailed Description
In order to make the objects, technical solutions and advantages of the present invention more apparent, the present invention is further described in detail below with reference to examples and accompanying drawings, and the exemplary embodiments and descriptions thereof are only used for explaining the present invention and are not meant to limit the present invention.
In the following examples of the present invention, the experimental materials used were populus Sinkiangensis (P.alba var. pyramidalis) and Pichia pastoris GS 115; the used pPIC9K, pCXSN, pYLCISPR/Cas 9-DH and pCXDG vectors are from the important laboratory of the department of biological resource and ecological environment education of the institute of Life sciences of Sichuan university, the competent cells of Escherichia coli DH5 alpha are from the company Limited in Biotechnology engineering (Shanghai), and the Agrobacterium GV3101 is from the company Limited in Beijing Soilebao technology.
The GFP described in the following examples of the invention refers to the Green Fluorescent Protein, Green Fluorescent Protein; the YPDA culture Medium refers to Yeast Extract Peptone Dextrose Medium, also called Yeast Extract Peptone glucose culture Medium; the MES refers to morpholine ethanesulfonic acid; said MgCl2Refers to magnesium chloride; the LiCl refers to lithium chloride; the Methanol refers to Methanol; the Sorbitol refers to Sorbitol; the DAPI refers to 4',6-diamidino-2-phenylindole (4',6-diamidino-2-phenylindole), is a fluorescent dye capable of being strongly combined with DNA, is commonly used for fluorescent microscope observation and is used as a nucleus Marker.
Example 1 identification of PalZAT10-1 Gene of Xinjiang Populus and phylogenetic analysis
All sequence data for PalZAT10s were from the genome of populus xinjiang; orthologous sequences of other species were retrieved and downloaded from JGI (https:// phytozome.jgi. doe. gov/pz/portal. html) and NCBI (https:// www.ncbi.nlm.nih.gov); constructing an ML phylogenetic tree through RAxML software, wherein the result is shown as a in FIG. 1; PalZAT10s of Xinjiang poplar and its homologous genes in other poplar were located on different chromosomes and generated in different repeats, and the results are shown as b in FIG. 1; the amino acid sequence alignment of the C2H2 protein was performed using MEGA v.6.0.6 and GeneDoc, and the results are shown in FIG. 1, C.
Example 2 analysis of upstream promoter element of PalZAT10-1 Gene of Xinjiang poplar
Cis-acting elements in the PalZAT10-1 promoter were predicted by an online software plantain (http:// bioinformatics. psb. element. be/webtools/plantain/html /). Analysis of the 1349bp promoter region upstream of the PalZAT10-1 gene resulted in the analysis of a number of cis-acting elements associated with abiotic stress as shown in FIG. 2: ABRE, ABA-reactive element; CRT/DRE, cold and dehydration response elements; SP1, a light sensitive element; HSE, thermal stress responsive element; GARE-motif, gibberellin-responsive element; MBS, MYB transcription factor recognition sites; TCA-element, salicylic acid reactive element; w-box, WRKY transcription factor.
Example 3 Effect of PalZAT10-1 Gene of Sinkiang Populus on salt stress
Transcriptome data of different tissues (root, leaf, xylem and phloem) obtained after treating Xinjiang poplar with NaCl of different concentrations were obtained. The expression patterns of 20 PalZAT10s genes containing two C2H2 domains in different tissues after the salt stress treatment of Xinjiang poplar were analyzed, and as a result, as shown in a in FIG. 3, the PalZAT10-1 gene (PAYT007874.1) has higher expression in four tissues, and the expression level of the PalZAT10-1 gene in roots, leaves and xylem is increased along with the increase of the salt concentration; the results of qRT-PCR further demonstrate the above results (fig. 3, b, where each set of data from left to right are leaf, root, xylem, phloem, respectively); the gene is expressed in pichia pastoris, a schematic diagram of vector construction is shown as a in fig. 4, and salt treatment is carried out on a YPDA culture medium added with Methanol, so that the result further shows that the PalZAT10-1 gene plays an important role in the process of responding to salt stress (fig. 3, c).
EXAMPLE 4 cloning of PalZAT10-1 Gene sequence of Xinjiang poplar
The method for extracting total RNA of leaf tissues of populus Sinkiangensis by using an RNA extraction and separation reagent Trizol comprises the following specific steps: weighing 0.1g of fresh Xinjiang poplar leaf tissue, immediately placing the fresh Xinjiang poplar leaf tissue in liquid nitrogen, grinding the Xinjiang poplar leaf tissue into powder, adding 1mL of Trizol reagent, fully and uniformly mixing, sucking the mixture into a centrifugal tube with the volume of 1.5mL, and standing the mixture for 5min at room temperature; continuously adding 0.2mL of chloroform, and violently and uniformly mixing for 15 s; standing at room temperature for 2-3 min; centrifuging at 4 ℃ at 12000r/min for 15min, taking the supernatant into a new 1.5mL centrifuge tube, and discarding the middle and lower layers; adding isopropanol with the same volume, mixing, and standing at room temperature for 10 min; centrifuging at 4 ℃ and 12000r/min for 10min to precipitate RNA, and removing supernatant; adding 75% ethanol, washing the precipitate for 1-2 times, centrifuging at 4 deg.C and 7500r/min for 2 min; the supernatant was discarded, the precipitate was air-dried, dissolved in 50. mu.L of DEPC water, and 0.5. mu.L of Recombination RNase Inhibitor (RRI) was added, and stored at-80 ℃ for further use.
The full-length sequence of PalZAT10-1 gene was obtained from the genome of Populus deltoides (Maet al, 2018), and the following primers were designed using bioinformatics techniques:
an upstream primer: 5'-ATGGCTCTTGAAGCTCTGAA-3', respectively;
a downstream primer: 5'-TTACGAAGAACCCATATCGG-3', respectively;
PalZAT10-1 gene sequence is obtained by reverse transcription and PCR amplification, and the specific method is as follows: this was carried out according to the user's manual of the Kit Plant RT-PCR Kit 2.01(TaKaRa, Japan). Mu.g of total RNA (approximately 1-2. mu.L) was mixed with various reverse transcription reagents from Kit (MgCl)24 mu L of the solution; 10 × RNA PCR Buffer2 μ L; 0.5 mu L of RNase Inhibitor; 8.5 mu L of RNase free Water; dNTP mix 2. mu.L; 1 μ L of Reverse Transcriptase; oligo dT-Adaptor 1. mu.L). Mixing, and heating at 42 deg.C for 30 min; 5min at 99 ℃; the reverse transcription reaction was completed at 4 ℃ for 5 min. 1 μ L of the reverse transcription product was aspirated as template for PCR: 5min at 94 ℃ and then the amplification program, 50s at 94 ℃, 50s at 55 ℃, 45s at 72 ℃ and 10min at 72 ℃ after 38 cycles. Through the process, the CDS sequence of the PalZAT10-1 gene is obtained through amplification, the total length of the PalZAT10-1 sequence obtained through amplification from the start codon to the stop codon is 759 basic groups, the nucleotide sequence is shown as SEQ ID No.1, and the amino acid sequence is shown as SEQ ID No. 2.
Example 5 subcellular localization of PalZAT10-1 Gene in Xinjiang Populus
The proteins translated from each gene are positioned differently in the cell, and their corresponding functions may be different, and the functions may be completely different. Thus, this example examined the subcellular localization of PalZAT10-1 protein in Xinjiang poplar.
According to pCXDG vector sequence information, then using bioinformatics technology, the following GFP-PalZAT10-1 positive clone strain identification primers were designed:
an upstream primer: 5'-GACTCAGATCTCGAGCTCAAG-3', respectively;
a downstream primer: 5'-ATTCGAGCTGGTCACCTGT-3' are provided.
Construction of PalZAT10-1 gene fusion green fluorescent protein GFP expression vector of Xinjiang poplar: the CDS fragment of PalZAT10-1 gene obtained in the example 3 after sequencing verification is connected to a pCXDG expression vector (the structure schematic diagram is shown in figure 4 and b) by an enzyme digestion connection method, transformed into Escherichia coli DH5 alpha competent cells, screened by 50mg/L kanamycin to obtain a positive clone primarily, further picked single clone is amplified by RCR, and subjected to sequencing verification to finally obtain an expression vector 35S:GFP-PalZAT 10-1 and a positive strain fused with GFP. Extracting a plasmid fused with GFP, transforming agrobacterium GV3101 competence, primarily screening positive clone strains through 50mg/L kanamycin, 50mg/L rifampicin and 50mg/L gentamicin, further selecting a single clone, amplifying through RCR, and verifying sequencing to finally obtain the GV3101 positive strain successfully transformed for infecting the Xinjiang poplar.
Transient expression of leaves of populus Sinkiangensis: culturing GV3101 positive strain successfully transformed by GFP-PalZAT10-1 plasmid in LB culture medium at 28 deg.C and 200r to OD value of about 0.6, centrifuging at 4000r for 10min, and collecting thallus; in MS resuspension (10mM MgCl)210mM MES, 150. mu.M acetosyringone, pH5.6), and culturing in the dark for 3 hours; the beaten 1cm2Placing the Xinjiang poplar leaf disc into a syringe tube, sucking a proper amount of heavy suspension bacteria liquid, blocking the tube opening with one hand, and pulling the plug with the other hand for about 4-5 times (the leaves are changed from a floating state to a suspended state in the heavy suspension bacteria liquid); spreading the soaked leaves on MS solid culture medium (150 μ M acetosyringone, pH5.6), dark culturing for 3 days, and observing fluorescence with laser confocal microscope。
As shown in FIG. 5, the PalZAT10-1 gene of Xinjiang poplar encodes a protein localized in the nucleus, and DAPI is the Marker of the nucleus.
Example 6 obtaining of transgenic Sinkiang poplar overexpressing PalZAT10-1 and Cas9 knock-out PalZAT10-1 Gene Sinkiang poplar and identification of positive plants
Construction of PalZAT10-1 Gene overexpression vector in Xinjiang Populus: connecting the gene fragment obtained in the sequencing verification example 3 to a pCXSN binary expression vector by an enzyme digestion connection method (the construction schematic diagram is shown in figure 4 and c); connecting the selected PalZAT10-1 gene Cas9 knockout target point to a pYLCRISPR/Cas9-DH binary expression vector (a construction schematic diagram is shown in figure 4 and d) by an enzyme digestion connection method, transforming Escherichia coli DH5 alpha competent cells, primarily obtaining positive clones by 50mg/L kanamycin screening, further selecting single clones, amplifying by RCR, and carrying out sequencing verification to finally obtain a positive strain of the expression vector fusing the PalZAT10-1 gene and a positive strain of the expression vector of the Cas9 knockout target point containing the selected PalZAT10-1 gene. Extracting successfully connected plasmids from positive strains, transforming the successfully connected plasmids into competent agrobacterium GV3101, primarily screening positive clone strains through 50mg/L kanamycin, 50mg/L rifampicin and 50mg/L gentamicin, further selecting positive monoclonal strains, amplifying through RCR, and verifying by sequencing to finally obtain successfully transformed agrobacterium GV3101 positive strains for infecting Xinjiang poplar.
Agrobacterium-mediated leaf disc transformation: the GV3101 positive strain which is successfully transformed by the constructed overexpression vector plasmid and the knockout vector plasmid is cultured in an LB culture medium at 28 ℃ and 200rpm until the OD value is about 0.5, the strain is collected by centrifugation at 5000rpm for 10min, and after the strain is resuspended in a resuspension solution (150 mu M acetosyringone, pH5.6), the resuspension solution is cultured in the dark for 3 hours for later use. Taking well-growing leaves of Xinjiang poplar sterile tissue culture seedlings, beating the leaves into leaf discs in an ultra-clean workbench by using a sterile puncher, putting the beaten leaf discs into a resuspension liquid after dark culture, soaking for 10 minutes, and shaking once every 2 minutes.
Obtaining adventitious buds of transgenic Xinjiang poplar: taking out the leaf disc soaked in the above steps, placing into callus induction culture medium, dark culturing for 10-15 days, placing into germination culture medium after callus grows out, culturing for 2-3 months, inducing adventitious bud, cutting off from the base part after adventitious bud grows to 1-2cm, and inoculating into rooting culture medium (figure 6, a). The callus culture medium, the adventitious bud induction culture medium and the adventitious root induction culture medium are all added with 20mg/L hygromycin for screening.
According to sequence information of a pCXSN vector, then, by utilizing a bioinformatics technology, the following identification primers for overexpression PalZAT10-1 transgenic Xinjiang poplar positive seedlings are designed:
an upstream primer: 5'-TCATCGCAAGACCGGCAACA-3', respectively;
a downstream primer: 5'-ACCTCGACCTCAACACAACA-3' are provided.
According to pYLCISPR/Cas 9-DH vector sequence information, then by using bioinformatics technology, the following identification primers of the Xinjiang poplar positive seedling with the Cas9 knockout PalZAT10-1 gene are designed:
an upstream primer: 5'-CCCGACATAGATGCAATAACTTC-3', respectively;
a downstream primer: 5'-GTCGTGCTCCACATGTTGACCG-3' are provided.
Obtaining a CDS full-length sequence of PalZAT10-1 gene according to the genome of the Xinjiang poplar, and then designing the following qRT-PCR primers by using a bioinformatics technology:
an upstream primer: 5'-CTTCTTACCAGGCTCTCGGC-3', respectively;
a downstream primer: 5'-GCCCTCATAGTGACAACGCT-3' are provided.
Identification of transgenic Xinjiang poplar positive plants and verification of expression quantity: culturing the adventitious bud induced by the steps in a rooting culture medium for 1-2 months, taking 0.1g of leaves to extract DNA, carrying out PCR amplification on a PalZAT10-1 target fragment, and carrying out sequencing verification; cutting off leaves of positive seedlings with proper sequencing, extracting RNA (the specific method is shown in example 3), and verifying the expression quantity of the positive seedlings through reverse transcription and qRT-PCR, wherein the specific method comprises the following steps: this was carried out according to the user's manual of the Kit Plant qRT-PCR Kit (TaKaRa, Japan). Mu.g total RNA (ca. 1-2. mu.L) was mixed with Kit's various reverse transcription reagents (5 Xg DNA Eraser Buffer 2. mu.L; gDNA Eraser 1. mu.L) plus RNase free Water to 10. mu.L. Mixing, and heating at 42 deg.C for 2 min; completing the reverse transcription first-step reaction at 4 ℃ for 5 min; mixing the product of the first step reaction with various reverse transcription reagents of Kit (Primerpript RT Enzyme 1 μ L; 5 XPimeript Buffer 4 μ L; RNase free Water 4 μ L; RT Primer Mix 1 μ L), mixing well, 15min at 37 ℃; 5s at 85 ℃; the second step of reverse transcription was completed at 4 ℃ for 5 min. Pipette 5. mu.L of the reverse transcription product and mix with various reverse transcription reagents of Kit (forward primer: 1. mu.L; reverse primer: 1. mu.L; SYBR: 10. mu.L; sterile water: 3. mu.L) to perform qRT-PCR: the amplification procedure is carried out after 30s at 95 ℃, 5s at 95 ℃ and 35s at 60 ℃, and the collection fluorescence procedure is carried out after 40 cycles, wherein the temperature is 95 ℃ for 1min, the temperature is 55 ℃ for 30s, and the temperature is 95 ℃ for 30 s. And (3) hardening the positive seedling plants with the verified expression quantity, transplanting the positive seedling plants into soil, growing in a greenhouse at 25 ℃ in a photoperiod of 16 hours of light/8 hours of darkness, wherein the soil-culture transgenic Xinjiang poplar and the expression quantity thereof are shown as b and c in figure 6, compared with the wild type, the obtained over-expression transgenic Xinjiang poplar PalZAT10-1OE shows more branches and more developed root systems, and the knocked-out Xinjiang poplar PalZAT10-1 shows the opposite (figure 6, b). According to the expression level of the gene, the PalZAT10-1OE line1 with the highest expression level and the PalZAT10-1line 11 with the lowest expression level are selected for measuring the abiotic stress related physiological indexes.
Example 7 determination of the physiological indices related to salt and osmotic stress resistance of transgenic and knock-out PalZAT10-1OE transgenic and knockout PalZAT10-1 Sinkiang Populus
Collecting tissue culture seedling with seedling age of 2 months, grinding the NaCl or Sorbitol treated PalZAT10-1OE, PalZAt10-1 obtained in example 5 and the eighth leaf from top to bottom of wild type Xinjiang poplar in the extractive solution, extracting, and measuring MDA, Pro, H2O2The content of (A) and SOD, POD activity. The extract used was purchased from Comin Biotechnology, China, and the measurement method was strictly described in the kit instructions (www.cominbio.com). As shown in a in FIG. 7, 200mM NaCl WT and PalZAT10-1 seedlings were severely damaged, whereas the PalZAT10-1OE seedlings were hardly damaged. Under salt treatment, chlorophyll a (Ca), chlorophyll b (Cb), total chlorophyll (Ct) and Pro were found to be highest in PalZAT10-1OE, followed by WT and PalZAT10-1 (b and e in FIG. 7), while the greatest EL and greatest EL were found in PalZAT10-1High MDA and H2O2Levels, followed by WT and PalZAT10-1OE (c, d, f in FIG. 7). Furthermore, analysis of activities against the oxidases POD and SOD showed that the activities of the two antioxidases were found to be highest in PalZAT10-1OE, followed by WT and PalZAT10-1 under salt stress (g-h in FIG. 7). Determination of H by histochemical staining with DAB2O2Accumulation of (D), results are shown in FIG. 7 as i, no significant difference was noted between PalZAT10-1, PalZAT10-1OE and WT poplar under normal conditions, while PalZAT10-1 leaves exhibited the darkest brown spots under salt treatment, indicating H2O2Accumulation was higher in PalZAT10-1, but not in WT and palZAT10-1 OE. The inventors also investigated these parameters under osmotic stress. WT, PalZAT10-1OE and PalZAT10-1 poplar seedlings were treated with 150mM Sorbitol solution, and related physiological indicators including MDA, Pro, H were determined2O2SOD and POD. The results showed that the phenotype of poplar plants under osmotic stress was similar to that observed under salt stress (j-n in FIG. 7). These results indicate that the over-expressed PalZAT10-1OE Xinjiang poplar significantly improved the salt and osmotic stress resistance; wherein each set of data in b-h and j-n in FIG. 7 is WT, PalZAT10-1OE, PalZAT10-1 from left to right, respectively.
The above examples show that the PalZAT10-1 gene can protect the permeability of cell membrane, improve the oxidation resistance and photosynthesis ability of plants, and further improve the salt resistance of plants, mainly by regulating various physiological indexes of Xinjiang poplar, which belongs to typical woody plants. Therefore, the inventor deduces that the PalZAT10-1 gene has the function of improving the salt stress resistance of woody plants in other regions with severe osmotic stress ecological environment except the Xinjiang poplar, can transform the PalZAT10-1 gene into other woody plants by a genetic engineering method, and can also promote the salt resistance of other woody plants.
Example 8 overexpression of PalZAT10-1OE transgene and knock-out PalZAt10-1 Sinkiang Populus salts followed by stomata scanning Electron microscopy
Due to physiological criteria in example 6, e.g. chlorophyll content, H2O2Content, etc. and salt stress and osmotic stress toleranceSex is strongly related to stomata, so this example studies the state of stomata under salt stress.
And (3) observing by a scanning electron microscope: after 2 months of soil culture of Xinjiang poplar with 200mM NaCl for 7 days, the eighth leaf from top to bottom is selected and quickly frozen for 30s by liquid nitrogen, and the leaves are immediately vacuumized and placed on a scanning electron microscope to observe stomata.
As shown in FIG. 8, overexpression of PalZAT10-1OE in Sinkiang poplar after salt treatment significantly closed stomata (a-b in FIG. 8). It was shown that the PalZAT10-1 gene primarily regulates stomatal opening and closing in response to abiotic stress.
Example 9 leaf stomata observed by scanning electron microscopy after ABA treatment of Populus deltoides overexpressing PalZAT10-1OE transgene and knock-out PalZAt10-1, and DAB staining
The ABA-responsive element ABRE was found in the promoter region of PalZAT10-1 (FIG. 2). Poplar seedlings cultivated in soil for 2 months were treated with 5M ABA for 0, 1.5 and 3 hours. Compared with the results obtained under the conditions of stomatal Open Solution (OS), the stomatal areas of both WT and PalZAT10-1OE were reduced after 1.5 hours of treatment with ABA, while the PalZAT10-1 did not change significantly; after 3 hours of treatment, the PalZAT10-1OE pores were substantially closed and the WT pore area was also reduced, but not significantly, the PalZAt10-1 pores began to close (FIG. 9, a-b).
To study H2O2Participation in ABA-induced stomatal pore size, isolated Xinjiang poplar leaves were treated by spraying 150M ABA (0, 1.5 and 3 hours) and stained with DAB, with the results shown in FIG. 9 c, PalZAT10-1OE leaves being darker brown than WT leaves, while PalZAT10-1 leaves appeared to be the lightest brown. The results show that PalZAT10-1OE passes through H2O2Accumulation significantly promoted ABA-induced stomatal closure.
Example 10 determination of stomatal conductance, relative Water content and Water use efficiency after drought treatment of Populus deltoides overexpressing the PalZAT10-1OE transgene and knock-out PalZAt10-1
Since a Dehydration Response Element (DRE) was identified in the PalZAT10-1 promoter (FIG. 2), the inventors investigated the response of PalZAT10-1 in response to drought stress. After drought treatment, the most severe lesions were detected in PalZAT10-1, followed by WT and palZAT101OE, and the expression of PalZAT10-1 was induced by drought stress (FIG. 10, a-b). Normally, RWC, MDA, Pro and H2O2There was no significant difference in the content of (D), but the activities of SOD and POD were significantly increased in PalZAT10-1 OE. However, after drought stress, leaf RWC values were highest for PalZAT10-1OE and lowest for PalZAT 10-1; EL, MDA and H of PalZAT10-1OE2O2The content is lowest, the Pro content and SOD and POD activities are highest, and PalZAT10-1 shows the opposite physiological index value to that of palZAT10-1OE (c in figure 10, figure 11, each group of data from left to WT, palZAT10-1OE and palZAT10-1 respectively); gs, Pn and Tr data indicate that WT, PalZAT10-1OE and PalZAT10-1 respond to drought stress in altered ways. Overall, as treatment time increased, the Gs and Tr values for PalZAT10-1OE were lower than WT, while those for PalZAT10-1 were higher; the Pn and WUE values for PalZAT10-1OE were the highest, followed by WT, and the Pn and WUE values for PalZAT10-1 were the lowest (FIG. 10, d-g).
In conclusion, the present inventors have found a gene PalZAT10-1 for improving water stress tolerance, which is localized to the nucleus. The gene PalZAT10-1 is overexpressed in the populus Sinkiangensis, so that the plant branches, root development and stomata closing can be promoted, and the antioxidant activity, the photosynthetic rate and the water utilization efficiency are improved; knocking out PalZAT10-1 gene in Xinjiang poplar obtains PalZAT10-1lines, and the phenotype of the PalZAT10-1OE lines is completely opposite. The gene has important significance for preventing water loss of plants and culturing excellent stress-resistant tree species, and lays a foundation for promoting deep research and development and utilization of poplar tree resources in China.
Sequence listing
<110> Lanzhou university
<120> gene PalZAT10-1 for improving abiotic stress tolerance of plants and application thereof
<160> 2
<170> SIPOSequenceListing 1.0
<210> 1
<211> 758
<212> DNA
<213> Sinkiang Populus (P. alba var. pyramidalis)
<400> 1
atggctcttg aagctctgaa ctctcctaca acagccgctc ctttaaatta tgaagaaaca 60
tggattaaga ggaaacgctc taagagacct cgtagtgagt ccccttctac cgaggaagaa 120
tacctcgctt tttgccttat catgcttgct cgtggcggct ccactgccgc aaccgccaaa 180
aaaaccgctt ccgcctcccc tgcaccaccc caaccaccaa ctttggatct ttcttacaag 240
tgtacggttt gcaacaaggc tttctcttct taccaggctc tcggcgggca caaagccagt 300
cacaggaaat cctcctccga gtcaaccgtc gccacagccg ccgaaaaccc atcagcctcc 360
accacaacta acacaaccac cacgaccacc aatggtagga ctcatgagtg ctctatctgc 420
cacaagactt tccttactgg acaggcctta ggcggacaca agcgttgtca ctatgagggc 480
acaattggag gcaacaacag cagcagtgct agcgctgcaa tcaccacctc agacggtggt 540
gctgttggag gcggtggcgt gagccagagt aaaagtcaaa gaagcggtgg tgggtttgac 600
tttgacctga acctgcctgc tttgcctgaa tttgaaggtc caagaatcag tcaacaagca 660
ctctacggtg atcaagaagt ggaaagtcct ttgccaggga aaaagccaag attaatgttt 720
tcgcttaagc aagaaaagac cgatatgggt tcttcgta 758
<210> 2
<211> 252
<212> PRT
<213> Sinkiang Populus (P. alba var. pyramidalis)
<400> 2
Met Ala Leu Gly Ala Leu Ala Ser Pro Thr Thr Ala Ala Pro Leu Ala
1 5 10 15
Thr Gly Gly Thr Thr Ile Leu Ala Leu Ala Ser Leu Ala Pro Ala Ser
20 25 30
Gly Ser Pro Ser Thr Gly Gly Gly Thr Leu Ala Pro Cys Leu Ile Met
35 40 45
Leu Ala Ala Gly Gly Ser Thr Ala Ala Thr Ala Leu Leu Thr Ala Ser
50 55 60
Ala Ser Pro Ala Pro Pro Gly Pro Pro Thr Leu Ala Leu Ser Thr Leu
65 70 75 80
Cys Thr Val Cys Ala Leu Ala Pro Ser Ser Thr Gly Ala Leu Gly Gly
85 90 95
His Leu Ala Ser His Ala Leu Ser Ser Ser Gly Ser Thr Val Ala Thr
100 105 110
Ala Ala Gly Ala Pro Ser Ala Ser Thr Thr Thr Ala Thr Thr Thr Thr
115 120 125
Thr Thr Ala Gly Ala Thr His Gly Cys Ser Ile Cys His Leu Thr Pro
130 135 140
Leu Thr Gly Gly Ala Leu Gly Gly His Leu Ala Cys His Thr Gly Gly
145 150 155 160
Thr Ile Gly Gly Ala Ala Ser Ser Ser Ala Ser Ala Ala Ile Thr Thr
165 170 175
Ser Ala Gly Gly Ala Val Gly Gly Gly Gly Val Ser Gly Ser Leu Ser
180 185 190
Gly Ala Ser Gly Gly Gly Pro Ala Pro Ala Leu Ala Leu Pro Ala Leu
195 200 205
Pro Gly Pro Gly Gly Pro Ala Ile Ser Gly Gly Ala Leu Thr Gly Ala
210 215 220
Gly Gly Val Gly Ser Pro Leu Pro Gly Leu Leu Pro Ala Leu Met Pro
225 230 235 240
Ser Leu Leu Gly Gly Leu Thr Ala Met Gly Ser Ser
245 250