阅读说明：本技术 可溶性和免疫反应性黄病毒ns1多肽 (soluble and immunoreactive flavivirus NS1 polypeptide ) 是由 E.法茨 A.里德尔 C.肖尔茨 P.明希 G.塔巴雷斯 M.格勒克 S.吕布克 J. 于 2018-04-23 设计创作，主要内容包括：本发明涉及适合于检测分离的生物样品中的针对黄病毒的抗体的多肽,其包含黄病毒NS1侧翼结构域特异性氨基酸序列,其中没有来自所述黄病毒的NS1 β-梯结构域的氨基酸序列存在于所述多肽中。在一个实施方案中,所述黄病毒选自寨卡病毒(ZIKV)、西尼罗病毒(WNV)、登革病毒1-4型(DENV1-4)、蜱传脑炎病毒(TBEV)、黄热病病毒(YFV)和日本脑炎病毒(JEV)。还公开了用于产生所述黄病毒NS1侧翼结构域特异性多肽的方法,用于检测对于第一黄病毒物种特异性的抗体的方法,所述黄病毒NS1侧翼结构域特异性多肽用于检测抗体的用途以及用于检测所述黄病毒抗体的试剂盒,所述试剂盒包含黄病毒NS1侧翼结构域多肽。(The present invention relates to a polypeptide suitable for the detection of antibodies against flavivirus in an isolated biological sample comprising flavivirus NS1 flanking domain specific amino acid sequences, wherein no amino acid sequence from the NS1 beta-ladder domain of said flavivirus is present in said polypeptide. In one embodiment, the flavivirus is selected from the group consisting of Zika virus (ZIKV), West Nile Virus (WNV), dengue virus types 1-4 (DENV1-4), tick-borne encephalitis virus (TBEV), Yellow Fever Virus (YFV), and Japanese Encephalitis Virus (JEV). Also disclosed are methods for producing the flavivirus NS1 flanking domain specific polypeptides, methods for detecting an antibody specific for a first flavivirus species, use of the flavivirus NS1 flanking domain specific polypeptides for detecting an antibody and a kit for detecting the flavivirus antibody, the kit comprising the flavivirus NS1 flanking domain polypeptides.)

1. A polypeptide suitable for detecting antibodies to flavivirus in an isolated biological sample comprising flavivirus NS1 flanking domain specific amino acid sequences, wherein no amino acid sequence from the NS1 β -ladder domain of said flavivirus is present in said polypeptide.

2. The polypeptide of claim 1, wherein no additional amino acid sequence of the flavivirus is present in the polypeptide.

3. The polypeptide of any one of claims 1 or 2, wherein the flavivirus is selected from the group consisting of Zika virus (ZIKV), West Nile Virus (WNV), dengue virus types 1-4 (DENV1-4), tick-borne encephalitis virus (TBEV), Yellow Fever Virus (YFV), Japanese Encephalitis Virus (JEV).

4. The polypeptide of any one of claims 1 to 3, wherein the flavivirus NS1 flanking domain specific amino acid sequence consists essentially of a polypeptide selected from the group consisting of SEQ ID No.1, 2, 5, 7, 9, 11, 13, 15, 17 and 19.

5. The polypeptide of any one of claims 1 to 4, wherein the polypeptide is fused to a chaperone.

6. The polypeptide of any one of claims 1 to 5, wherein the chaperone is selected from SlyD, SlpA, FkpA, and Skp.

7. The polypeptide of claim 6, which is selected from the group consisting of SEQ ID NO 21 (Zika), 28(DENV1), 29(DENV2), 30(DENV3) and 31(DENV 4).

8. a method of producing soluble and immunoreactive flavivirus NS1 flanking domain polypeptides, the method comprising the steps of:

a) Culturing a host cell transformed with an expression vector comprising an operably linked recombinant DNA molecule encoding a flavivirus NS1 flanking domain polypeptide according to any one of claims 1 to 7,

b) Expressing the flavivirus NS1 flanking domain polypeptides, and

c) Purifying the flavivirus NS1 flanking domain polypeptides.

9. Method for the detection of antibodies specific for a first flavivirus species in an isolated sample, wherein flavivirus NS1 flanking domain polypeptides of the first flavivirus species according to any one of claims 1 to 7 are used as capture reagents and/or binding partners for the anti-flavivirus antibodies.

10. A method for detecting an antibody specific for a first flavivirus species in an isolated sample, the method comprising

a) Forming an immunoreaction mixture by mixing a sample of bodily fluid with flavivirus NS1 flanking domain polypeptides of the first flavivirus species of any one of claims 1-7

b) Maintaining the immunoreaction mixture for a period of time sufficient to immunoreactive antibodies directed to the flavivirus NS1 flanking domain polypeptide present in a sample of bodily fluid with the flavivirus NS1 flanking domain polypeptide to form an immunoreaction product; and

c) Detecting the presence and/or concentration of any of the immunoreaction products.

11. The method for detecting antibodies specific for a first flavivirus species in an isolated sample according to any of claims 9 or 10, wherein the antibodies detected are IgG or IgM antibodies.

12. The method for detecting antibodies specific for a first flavivirus species in an isolated sample according to any one of claims 9 to 11, wherein the first flavivirus species is dengue virus type 1-4.

13. Use of the flavivirus NS1 flanking domain polypeptide according to any one of claims 1-7 in an in vitro diagnostic test for the detection of anti-flavivirus antibodies.

14. A kit for detecting anti-flavivirus antibodies comprising flavivirus NS1 flanking domain polypeptides according to any one of claims 1 to 7.

15. The kit of claim 14, comprising in separate containers or in separate compartments of a single container unit at least a microparticle coated with avidin or streptavidin and the flavivirus NS1 flanking domain polypeptide of any of claims 1 to 7 covalently coupled to biotin.

16. A method for detecting antibodies against a first flavivirus in an isolated biological sample putatively containing antibodies against at least one second flavivirus different from said first flavivirus by using a flavivirus NS1 polypeptide comprising the complete or partial sequence of the beta-ladder domain as specific binding partner, wherein the cross-reactivity against at least one second flavivirus different from said first flavivirus is eliminated by: adding a polypeptide comprising the NS1 beta-ladder domain of the flavivirus in unlabeled form as a quencher, and in one embodiment, adding the polypeptide comprising the beta-ladder domain as a quencher.

17. Use of a flavivirus NS1 beta-ladder domain polypeptide as an agent for reducing interference in an immunoassay for the detection of an anti-flavivirus antibody.

Summary of the invention:

The present invention relates to a polypeptide suitable for the detection of antibodies against flavivirus in an isolated biological sample comprising flavivirus NS1 flanking domain specific amino acid sequences, wherein no amino acid sequence from the NS1 beta-ladder domain of said flavivirus is present in said polypeptide. In one embodiment, no additional amino acid sequence of the flavivirus is present in the polypeptide. In one embodiment, the flavivirus is selected from the group consisting of Zika virus (ZIKV), West Nile Virus (WNV), dengue virus types 1-4 (DENV1-4), tick-borne encephalitis virus (TBEV), Yellow Fever Virus (YFV), and Japanese Encephalitis Virus (JEV). The invention also relates to a method for producing said flavivirus NS1 flanking domain specific polypeptides, a method for detecting antibodies specific to a flavivirus, in particular for detecting a first flavivirus species in the presence of an antibody directed against at least a second or a plurality of flavivirus species, the use of said flavivirus NS1 flanking domain specific polypeptides for detecting antibodies and a kit for detecting said flavivirus antibodies, said kit comprising a flavivirus NS1 flanking domain polypeptide.

Description of the disclosed amino acid sequences:

The mature NS1 protein contains 352 amino acid residues (NS1, 1-352). Within the NS1 protein, the flanking domain comprises 151 amino acid residues and spans the NS1 amino acid region 30-180. Thus, by adding 29 amino acid positions, the flanking domain positions (1-151) are easily converted to the NS1 numbering. Vice versa, by subtracting up to 29 amino acid positions, the NS1 amino acid position is easily converted to flanking domain numbering; aa1 (side wing) aa 30(NS1), aa 2 (side wing) aa 31(NS1), aa 3 (side wing) aa 32(NS1), and so on. In a similar manner, the β -ladder domain positions (1-162) were readily converted to the NS1 numbering by adding 190 amino acid positions, since NS1 position 191-352 corresponds to the β -ladder domain.

SEQ ID NO：1 XSEQ ID NO: 1, a flanking domain aa 30-180 of Zika virus NS1, wherein position 179X is A or S or C

SEQ ID NO：2SEQ ID NO:2, aa 30-180 flanking domain of Zika virus NS1, which has C55, C143 and C179A

SEQ ID NO：3SEQ ID NO: 3, full-length aa 1-352 of Zika virus NS 1; this sequence is also disclosed as strain MR766, UniProt ID W8Q7Q 3; the corresponding number in the full-length Zika precursor polyprotein is aa 795-

SEQ ID NO：4SEQ ID NO: 4, Zika virus NS1 beta-ladder domain aa191-352

SEQ ID NO：5 XSEQ ID NO: 5, tick-borne encephalitis (FSME) virus NS1 flanking domain aa 30-180 according to UniProt ID P14336; european subtype line Neudoerfl; x ═ A or C or S

SEQ ID NO：6：SEQ ID NO: 6: full length aa 1-352 tick-borne encephalitis (FSME) virus NS 1; this sequence is also disclosed as european subtype line Neudoerfl, UniProt ID P14336; the corresponding number in the full-length precursor is aa 777-1128.

SEQ ID NO：7 XSEQ ID NO: 7, dengue virus type 1 NS1 flanking domains aa 30-180; x ═ A or C or S

SEQ ID NO：8SEQ ID NO: 8, dengue virus type 1 NS1 full-length aa 1-352; this sequence is also disclosed under UniProt ID W8FUV 0; the corresponding number in the full-length precursor is aa 776-1127.

SEQ ID NO：9 XSEQ ID NO: 9, dengue virus type 2NS1 flanking domains aa 30-180; x ═ A or C or S

SEQ ID NO：10SEQ ID NO: 10, dengue virus type 2NS1 full length aa 1-352; this sequence is also disclosed as line Thailand/16881/1984 according to UniProt ID P29990; the corresponding number in the full-length precursor is aa 776-1127.

SEQ ID NO：11 XSEQ ID NO: 11, dengue virus type 3NS1 flanking domains aa 30-180; x is A or C or S)

SEQ ID NO：12SEQ ID NO: 12, dengue virus type 3NS1 full length aa 1-352; this sequence is also disclosed under UniProt ID W8FRG 8; the corresponding number in the full-length precursor is aa 774-1125.

SEQ ID NO：13 XSEQ ID NO: 13, dengue virus type 4NS1 flanking domain aa 30-180; x is A or C or S)

SEQ ID NO：14SEQ ID NO: 14, dengue virus type 4NS1 full length aa 1-352; this sequence is also disclosed as line Philippines/H241/1956, UniProt ID Q58HT 7; the corresponding number in the full-length precursor is aa 775-1126.

SEQ ID NO：15 XSEQ ID NO: 15, west nile virus NS1 flanking domain aa 30-180; x ═ A or C or S

SEQ ID NO：16SEQ ID NO: 16, west nile virus NS1 full length aa 1-352; this sequence is also disclosed under UniProt ID P06935; the corresponding number within the full-length precursor is aa 788-1139.

SEQ ID NO：17 XSEQ ID NO: 17, the flanking domains aa 30-180 of yellow fever virus NS 1; x ═ A or C or S

SEQ ID NO：18SEQ ID NO: 18, full-length aa 1-352 of yellow fever virus NS 1; this sequence is also disclosed as strain 17D vaccine, UniProt ID P03314; the corresponding number in the full length precursor is aa 779-1130.

SEQ ID NO：19 XSEQ ID NO: 19, the flanking domain aa 30-180 of Japanese encephalitis virus NS 1; x ═ A or C or S

SEQ ID NO：20SEQ ID NO: 20, Japanese encephalitis virus NS1 full-length aa 1-352; this sequence is also disclosed under UniProt ID Q9YJ 16; the corresponding number in the full-length precursor is aa 795-1146.

SEQ ID NO：21SEQ ID NO:21, fusion protein of tandem escherichia coli SlyD and Zika virus NS1 flanking domain aa 30-180

SEQ ID NO：22SEQ ID NO: 22, fusion protein of Escherichia coli SlyD and Zika virus NS1 beta-ladder domain (aa191-352, strain Mr766) in series

SEQ ID NO：23SEQ ID NO: 23, fusion protein of Escherichia coli SlyD and Zika virus NS1 beta-ladder domain (aa191-352 strain Mr766)

SEQ ID NO：24SEQ ID NO: 24, dengue virus type 1 NS1 beta-ladder domain aa191-352

SEQ ID NO：25SEQ ID NO: 25, dengue virus type 2NS1 beta-ladder domain aa191-352

SEQ ID NO：26SEQ ID NO: 26, dengue virus type 3NS1 beta-ladder domain aa191-352

SEQ ID NO：27SEQ ID NO: 27, dengue virus type 4NS1 beta-ladder domain aa191-352

XSEQ ID NO: sequences from 28 to 35 are shown in the electronic sequence listing. Amino acid X indicates that the position may be filled with alanine, cysteine or serine (X ═ a or C or S).

SEQ ID NO：28SEQ ID NO: 28, fusion protein of tandem escherichia coli SlyD and dengue virus type 1 NS1 flanking domain aa 30-180

SEQ ID NO：29SEQ ID NO: 29, fusion protein of tandem escherichia coli SlyD and dengue virus type 2NS1 flanking domain aa 30-180

SEQ ID NO：30SEQ ID NO: 30, fusion protein of tandem escherichia coli SlyD and dengue virus type 3NS1 flanking domain aa 30-180

SEQ ID NO：31SEQ ID NO: 31, fusion protein of tandem escherichia coli SlyD and dengue virus type 4NS1 flanking domain aa 30-180

SEQ ID NO：32SEQ ID NO: 32, fusion protein of Escherichia coli SlyD and dengue virus type 1 NS1 beta-ladder domain aa191-352 in series

SEQ ID NO：33SEQ ID NO: 33, fusion protein of Escherichia coli SlyD and dengue virus type 2NS1 beta-ladder domain aa191-352 in series

SEQ ID NO：34SEQ ID NO: 34, fusion protein of Escherichia coli SlyD and dengue virus type 3NS1 beta-ladder domain aa191-352 in series

SEQ ID NO：35SEQ ID NO: 35, fusion protein of Escherichia coli SlyD and dengue virus type 4NS1 beta-ladder domain aa191-352 in series

Detailed Description

Commercial immunoassays (both IgG and IgM immunoassays) for detecting flavivirus antibodies, such as antibodies to zika virus, dengue virus, and west nile virus, are based on ELISA principles. However, known immunoassays apparently use the full-length NS1 antigen, which on the one hand is highly immunoreactive, but on the other hand shows high immunological cross-reactivity with antibodies raised against NS1 homologues of zika virus, dengue virus and other flaviviruses (such as west nile virus), yellow fever virus or other flaviviruses. In addition, due to its complex quaternary structure, it is not possible to provide NS1 in a soluble and stable monomeric form, which would be a prerequisite for designing immunoassays for specific IgG detection in a double antigen sandwich format. No dedicated flavivirus NS1 antigen meeting these requirements and capable of achieving a highly specific immunoassay suitable for automation has been described in the prior art. Surprisingly, by limiting the flavivirus NS1 antigen to its flanking domain and removing the so-called β -ladder domain sequence of the NS1 antigen, a soluble and stable NS1 antigen variant was obtained that was able to specifically detect antibodies against a particular class of flavivirus.

when samples positive for anti-Zika virus antibodies were tested with two different fragments of the NS1 antigen of Zika (i.e., the so-called "flanking" domain antigen and the so-called "beta ladder" domain antigen), it was evident that both antigens were able to detect anti-Zika antibodies. However, we found that the flanking domain antigen did not cross-react with dengue antibody positive samples, whereas the Zika NS1 β -ladder domain antigen cross-reacts with dengue antibody positive samples, leading to false positive results and false conclusions. Additional blocking experiments with NS1 antigen against zika positive sera and related arboviruses finally showed that these related arbovirus NS1 antigens hardly quenched the zika NS1 flanking domain antigenic signal, whereas the zika NS1 β -ladder domain signal was significantly quenched. We conclude that the competition-associated arbovirus NS1 antigen significantly blocked the binding of the beta-ladder antigen to immunoglobulins. Thus, we were able to show that the Zika NS1 flanking domain antigen was less susceptible to immunological cross-reactivity with other arbovirus NS1 homologs. As a result, the zika NS1 flanking domain enables immunoassays with excellent specificity against zika antibodies that are capable of diagnosing zika virus infection in the presence of other (recent or past) arbovirus infections, in one embodiment, distinguishing zika virus infection from dengue virus infection.

Similarly, for dengue virus antibody detection, we were able to identify NS1 flanking domain antigens from all four dengue virus serotypes, which we over-expressed in e.coli in high yield and refolded into immunoreactive form after purification and functional solubilization. We found evidence that the individual dengue flanking domains of DENV1-4 reacted very differently to a pre-characterized commercial group of DENV-positive sera. The results indicate that immunological differentiation of four different dengue virus serotypes is feasible using the dengue NS1 flanking domain as an antigen in an immunoassay. In general, the dengue NS1 flanking domain, which lacks the β -ladder domain of NS1, is an antigen suitable for specific dengue antibody detection.

In a parallel approach against west nile virus, we were also able to overproduce (in e.coli) to purify and functionally fold NS1 flanking domain antigens, which allowed specific detection of antibodies against west nile virus.

based on our experimental findings, we concluded that the flavivirus NS1 flanking domain, which does not contain the amino acid sequence of the NS1 β -ladder domain, acts as an excellent antigen for the specific detection of antibodies against flaviviruses corresponding to the NS1 flanking domain amino acid sequence used, thereby distinguishing it from other flaviviruses. In particular, this conclusion applies to the specific detection of antibodies to Zika, dengue and West Nile viruses.

The present invention thus relates to a polypeptide suitable for the detection of antibodies against flavivirus in an isolated biological sample comprising flavivirus NS1 flanking domain specific amino acid sequences, wherein no amino acid sequence from the NS1 β -ladder domain of said flavivirus is present in said polypeptide. In one embodiment, no additional amino acid sequence of the flavivirus is present in the polypeptide. In another embodiment, the flavivirus is selected from the group consisting of Zika virus (ZIKV), West Nile Virus (WNV), dengue virus types 1-4 (DENV1-4), tick-borne encephalitis virus (TBEV), Yellow Fever Virus (YFV), Japanese Encephalitis Virus (JEV), and in one embodiment, the flavivirus is dengue virus types 1-4.

In one embodiment, the NS1 flanking domain-specific amino acid sequence consists essentially of a polypeptide selected from the group consisting of SEQ ID nos. 1, 2, 5, 7, 9, 11, 13, 15, 17 and 19, in one embodiment from the group consisting of SEQ ID nos. 7, 9, 11, 13 and 15, and in one embodiment from the group consisting of SEQ ID nos. 7, 9, 11 and 13 (NS1 domain of dengue virus types 1-4).

The terms "NS 1", "NS 1 antigen", "NS 1 polypeptide" are used synonymously and refer to the first non-structural antigen (NS1) within the virus precursor polyprotein and to (unless otherwise indicated) the full-length antigen NS 1. The structure of this protein has been described in Akey et al, supra, for West Nile Virus and dengue Virus 2. For Zika NS1, Song et al (supra) have described the structure of the C-terminal domain (amino acid residues 172-352), and Brown et al (supra) have described the complete NS1 three-dimensional structure in further detail. The zika NS1 sequence comprises 352 amino acids and is shown in SEQ ID NO: 3, tick-borne encephalitis virus NS1 is shown in SEQ ID NO: dengue virus type 1 NS1 is shown in SEQ ID NO: in 8, dengue virus type 2NS1 is shown in SEQ ID NO: 10, dengue virus type 3NS1 is shown in SEQ ID NO: 12, dengue virus type 4NS1 is shown in SEQ ID NO: in 14, west nile virus NS1 is shown in SEQ ID NO: 16, yellow fever virus NS1 is shown in SEQ ID NO: 18, japanese fever virus NS1 is shown in SEQ ID NO: 20 (c). The term "NS 1-flanking" or "NS 1-flanking domain", "NS 1-flanking variant" or "NS 1-flanking region" refers to a domain within the NS1 polypeptide, and thus is part of the sequence of NS 1. For the Zika NS1 flanking domain, this is exemplified by SEQ ID NO: 1 and 2, the NS1 flanking domain for other flaviviruses, is exemplified by SEQ ID NO: 5(TBEV), NO: 7(DENV1), NO: 9(DENV2), NO: 11(DENV3), NO: 13(DENV4), NO: 15(WNV), NO: 17(YEV) and NO: 19 (JEV). Furthermore, the terms "polypeptide", "polypeptides", "antigen" and "antigens" are to be understood as synonyms, unless otherwise indicated.

The synonymous terms "β -ladder", "β -ladder domain" or "ladder tip antigen" or "ladder tip", "ladder tip domain", "ladder tip polypeptide", "ladder tip antigen" refer to the NS1 domain located adjacent to the C-terminal flanking domain. For west nile virus and dengue virus 2, this domain has been described in Akey et al, supra. For Zika virus, the NS1 domain has been described by Song et al (supra) and Brown et al (supra). For the zika NS1 β -ladder domain, the amino acid sequence is exemplified in SEQ ID NO: 4, for dengue virus types 1-4, the amino acid sequence is exemplified by SEQ ID NO: 24-27. The β -ladder domains of other flaviviruses can be found in the C-terminal part (aa191-352) of the full-length NS1 sequence corresponding to each virus.

These definitions apply to all arboviruses within this specification. The following arboviruses belonging to the flaviviridae family may be abbreviated as follows: west Nile virus (West Nile, WNV), tick-borne encephalitis virus (TBEV or FSME), dengue virus 1-4 (dengue, four strains of dengue: DENV1-4), Yellow Fever Virus (YFV), Japanese Encephalitis Virus (JEV).

According to the present invention, the flavivirus NS1 flanking domain specific amino acid sequence is an amino acid sequence wherein no amino acid sequence from the NS1 β -ladder domain of the flavivirus is present in the polypeptide. In one embodiment, no additional amino acid sequence of the flavivirus is present in the polypeptide. For example, the Zika NS1 flanking domain polypeptide contains only the flanking domain sequence, and in one embodiment, SEQ ID No.1 or 2. NO additional zika virus, in one embodiment, NO zika virus NS1 specific amino acid sequence is present in this sequence, in one embodiment, SEQ ID NO: 4 is absent from the polypeptide sequence. In a further example, DENV1 NS1 flanking domain comprises SEQ ID NO: 7, but not SEQ ID NO: 24 (. beta. -ladder). Other examples are the DENV2NS1 flanking (SEQ ID NO: 9), where there is NO SEQ ID NO: 25; DENV3NS1 flanks (SEQ ID NO: 11), wherein there is NO SEQ ID NO: 26; DENV4NS1 flanks (SEQ ID NO: 13), wherein there is NO SEQ ID NO: 27; WNV NS1 was flanked (SEQ ID NO: 15) by NO WNV β -ladder domains. The absence of NS1 β -ladder domain specific sequences, and in one embodiment, the absence of additional flavivirus NS1 specific sequences or additional flavivirus specific sequences, supports the goal of reducing or completely avoiding cross-reactivity with antibodies raised against other arboviruses.

However, variants of the flavivirus NS1 flanking domain polypeptides are also contemplated. These variants can be easily generated by those skilled in the art by conservative or homologous substitution of the disclosed amino acid sequences, such as for example substitution of alanine or serine for cysteine, or valine for isoleucine, or vice versa. The term "variant" in this context also relates to a protein or a protein fragment (i.e., a polypeptide or peptide) that is substantially similar to the protein. For example, modifications such as C-or N-terminal truncations at one or both termini of 1 to 10 amino acids, in one embodiment 1 to 5 amino acids, are within the scope of the claimed flavivirus NS1 flanking domain antigen. In particular, a variant may be an isoform that shows amino acid exchanges, deletions or insertions compared to the amino acid sequence of the most prevalent isoform of the protein. In one embodiment, such substantially similar proteins have at least 80%, in another embodiment at least 85% or at least 90%, and in yet another embodiment at least 95% sequence similarity to the most prevalent isoform of the protein. The term "variant" also relates to post-translationally modified proteins such as glycosylated or phosphorylated proteins. According to the present invention, variants are classified as flavivirus NS1 flanking domain variants, as long as the immunoreactivity in the in vitro diagnostic immunoassay is unchanged or substantially maintained, i.e., the variants are still able to bind and detect anti-flavivirus antibodies present in the isolated sample, while antibodies raised against other arboviruses are not detected or are detected to a much lesser extent. In addition, the overall three-dimensional structure of the flavivirus polypeptide remains unchanged, such that there are still accessible epitopes in the variant that were previously (i.e., in the wild type) present and accessible for binding to antibodies.

A "variant" is also a protein or antigen that has been modified, for example, by covalent or non-covalent attachment of a label or carrier moiety to the protein or antigen. Possible labels are radioactive, fluorescent, chemiluminescent, electrochemiluminescent, enzymes or others, such as digoxin (digoxigenin), digoxigenin (digoxigenin) or biotin, for example. Such markers are known to those skilled in the art.

When the provided polypeptide sequence information, designated in the form of SEQ ID NO, is described by the term "consisting essentially of" (i.e. the sequence), this means that the sequence is present as literally set forth, but may also be present as a variant that does not substantially affect the essential characteristics of the polypeptide in terms of immunological binding to an antibody. An example thereof is the deletion or addition of only few amino acids at the N-and/or C-terminus of the peptide, and the exchange of similar amino acids, such as for example alanine for serine, isoleucine for valine and vice versa.

The flavivirus NS1 flanking domain antigens of the present invention are soluble, stable and immunoreactive, i.e., they are suitable as antigens for use in immunological assays. This means that the antigen according to the invention is soluble under physiological buffer conditions, e.g. in a phosphate buffer system at ambient temperature without the addition of detergent. The antigen is also capable of binding to or being recognized and bound by an antibody specific for the flanking domain of flavivirus NS1 (such as, for example, an anti-zika or anti-dengue antibody present in an isolated sample such as human serum).

In one embodiment, the addition of non-flavivirus specific linker or peptide fusion amino acid sequences to the flavivirus NS1 flanking domain polypeptides is possible because these sequences are not specific for anti-flavivirus antibodies and do not interfere with in vitro diagnostic immunoassays.

In one embodiment, the flavivirus NS1 flanking domain antigen may be fused to a chaperone. The terms "fusion protein", "fusion polypeptide" or "fusion antigen" refer to a protein comprising the flavivirus NS1 flanking domain polypeptide and at least one chaperone-derived protein moiety that provides the function of a fusion partner.

Chaperones are well known folding accessory proteins that assist in the folding and maintenance of structural integrity of other proteins. Examples of folding aids are described in detail in WO 03/000877. According to the present invention, peptidyl-prolyl isomerase class of chaperones such as FKBP family of chaperones can be used to fuse with flavivirus NS1 flanking domain antigen variants. Examples of FKBP chaperones suitable as fusion partners are FkpA, SlyD and SlpA. Other chaperones suitable as fusion partners for the antigens flanking flavivirus NS1 are Skp, a trimeric chaperone from the periplasm of E.coli, which does not belong to the FKBP family. It is not always necessary to use the complete sequence of the chaperone. Functional fragments of chaperones (so-called modules or polypeptide binding motifs capable of binding) which still have the desired ability and function can also be used (cf. WO 98/13496).

In a further embodiment of the invention, at least one or at least two components of the FKBP chaperone (such as e.g. e.coli SlyD, SlpA or FkpA) are used as fusion moiety for expression of the flavivirus NS1 flanking domain antigen. The chaperone Skp can likewise be used as fusion partner. The fusion of the two FKBP-chaperone domains results in increased solubility of the resulting fusion polypeptide. The fusion moiety may be located at the N-terminus or C-terminus or both termini of the flavivirus NS1 flanking domain antigen (sandwich-like).

In one embodiment, the flavivirus NS1 flanking domain antigen is fused to an oligomeric chaperone. Oligomeric chaperones are chaperones that naturally form dimers, trimers or higher order multimers, allowing the assembly of multiple monomeric subunits into well-defined functional quaternary structures through specific non-covalent interactions. Thus, covalently fused antigens are also forced to a higher epitope density. Preferred oligomeric chaperones are FkpA and Skp. The multimerized antigens are particularly useful for detecting IgM antibodies and thus early immune responses that occur immediately after infection.

In one embodiment, the flavivirus NS1 flanking domain polypeptide is fused to one, two or more bacterial chaperone molecules SlyD, SlpA, FkpA or Skp, in one embodiment escherichia coli chaperone molecules SlyD, SlpA, FkpA or Skp. In a further embodiment, the flavivirus NS1 flanking domain polypeptide consists of SEQ ID NO:21 (Zika), 28(DENV1), 29(DENV2), 30(DENV3) or 31(DENV 4).

Another embodiment of the invention is the flavivirus NS1 flanking domain antigen that does not immunologically cross-react with antibodies raised against structurally related antigens from other flaviviruses. In one example, the zika NS1 flanking domain antigen does not hybridize to a polypeptide sequence directed to a polypeptide sequence from a sequence comprising SEQ ID NO: 5 or 6 and/or from a tick-borne encephalitis virus comprising any of SEQ ID NOs: 7 to 14 and/or a dengue virus from a dengue virus comprising any one of SEQ ID NOs: 15 or 16 and/or a virus derived from a west nile virus comprising SEQ ID NO: 17 or 18 and/or a virus from a yellow fever virus comprising any one of SEQ ID NOs: 19 to 20 but immunologically cross-reactive with an antibody raised against a structurally related antigen of japanese encephalitis virus according to SEQ ID NO: 3, and 3, an antibody immune response generated by the full-length Zika virus NS1 antigen. In a further embodiment, the zika NS1 antigen is a zika NS1 flanking domain antigen, wherein the zika specific sequence consists essentially of SEQ ID NO: 1 or 2, and in one embodiment consists of SEQ ID NO: 1 or 2. According to zika NS1, there are also other flavivirus NS1 antigens, such as, for example, NS1 of dengue types 1-4, that do not immunologically cross-react with antibodies raised against structurally related antigens from other flaviviruses, i.e., in the dengue example, with the NS1 flanking domains of zika, TBEV, WNV, YEV and JEV.

The term "no immunological cross-reactivity" denotes an undesired immunoreactivity which is strongly reduced or completely eliminated. The term "immunological cross-reactivity" has been created to illustrate unwanted binding of immunoglobulins due to the similarity in sequence or structure of the antigen and the immunogen against which the antibody has been initially established. In one embodiment, the Zika virus NS1 flanking domain polypeptides exhibit complete elimination or strong reduction in immunoreactivity towards an antibody or subset of antibodies raised against the homologous or related arbovirus NS1 antigen named above, as compared to the full-length Zika virus NS1 polypeptide. In yet another embodiment, the zika virus NS1 flanking domain polypeptides show strongly reduced immunological cross-reactivity towards antibodies or antibody subsets raised against dengue virus, in one embodiment towards antibodies raised against dengue virus types 1, 2, 3, 4. In a further embodiment, the strongly reduced immunological cross-reactivity of the polypeptide flanking domain of zika virus NS1 is also applicable to antibodies or subsets of antibodies raised against yellow fever virus. In yet another embodiment, the dengue virus type 1-4 virus NS1 flanking domain polypeptides exhibit a strong reduction in immunological cross-reactivity toward antibodies or antibody subsets produced against zika virus.

The expression "no immunological cross-reaction" also refers to the case where in an immunoassay in the form of a double antigen sandwich for the detection of antibodies, the sample antibody (i.e. the analyte antibody) is bound by two specific antigens: one capable of binding to a solid phase and the other carrying a label, the sample antibody being sandwiched between two antigens. In the presence of analyte antibodies, the labeled antigen-within the resulting ternary immune complex-is absorbed to the solid phase and a signal is generated. In the present case, the flavivirus NS1 flanking domain polypeptides, such as, for example, zika NS1 flanking, were labeled and the measured signal was set to 100%. In a parallel or subsequent experiment, the same assay is performed with another aliquot of the same (positive) sample, and in addition, a non-labeled antigen having an amino acid sequence suspected of competing with the labeled antigen is added to the mixture. In the present case, full-length NS1 polypeptide of TBEV, DENV1-4, WNV, YFV or JEV was added. In another embodiment, an NS1 polypeptide consisting of only the NS1 flanking domain of TBEV, DENV1-4, WNV, YFV or JEV or comprising only the NS1 flanking domain of TBEV, DENV1-4, WNV, YFV or JEV is added. The flavivirus (in this example: Zika) NS1 polypeptide is not susceptible to signal quenching when the signal obtained after measurement is maintained at about at least 70% signal recovery, in one embodiment at least 80% signal recovery, in one embodiment at least 85% signal recovery, and in one embodiment at least 90% signal recovery of the original signal. It is not outweighed by the added antigen and is therefore resistant to potentially cross-reactive species. For illustration, such blocking experiments are described in example 2 (table 2).

In one embodiment, a peptide from a nucleic acid comprising SEQ ID NO: 5 or 6 and/or from a tick-borne encephalitis virus comprising any of SEQ ID NOs: 7 to 14 and/or a dengue virus from a dengue virus comprising any one of SEQ ID NOs: 15 or 16 and/or a virus derived from a west nile virus comprising SEQ ID NO: 17 or 18 and/or a virus from a yellow fever virus comprising any one of SEQ ID NOs: 19 to 20 of Japanese encephalitis virus NS1 full-length or NS1 flanking domain peptide.

In another embodiment, the zika NS1 flanking domain polypeptide has a sequence that is identical to a sequence directed to a sequence set forth in SEQ ID NO: 3, the full-length NS1 antigen produced an antibody or a subset of antibodies immunoreactive. This means that the signal of the flanking domain polypeptide of Zika NS1 should be completely quenched (100%) after addition of the full-length Zika NS1 polypeptide in the assay protocol disclosed above.

The method of how to determine immunological cross-reactivity to Zika-associated virus is further described in example 2 and can be transferred in a similar manner to blocking experiments with other flaviviruses.

the flavivirus NS1 polypeptides (flanking and β -ladder domains) and the polypeptides used in the blocking experiments of example 2 can be generated and prepared by recombinant DNA techniques and protein purification techniques known in the art. Another aspect of the invention is therefore a recombinant DNA molecule encoding the flavivirus NS1 flanking domain antigens, in one embodiment the antigens according to SEQ ID NOs 1, 2, 21, 5, 7, 9, 11, 13, 15, 17, 19, 28, 29, 30 and 31 and variants thereof as further defined above.

The term "recombinant DNA molecule" refers to a molecule made by combining two otherwise isolated segments of DNA sequences by the manual manipulation of the isolated segments of a polynucleotide by genetic engineering techniques or by chemical synthesis. In doing so, polynucleotide segments having the desired functions can be joined together to generate the desired combination of functions. Recombinant DNA techniques for expressing proteins in prokaryotic or lower or higher eukaryotic host cells are well known in the art. They have been described, for example, by Sambrook et al, (1989, Molecular Cloning: A Laboratory Manual).

The recombinant DNA molecule according to the present invention may also contain a sequence encoding a linker peptide of 5 to 100 amino acid residues between the flavivirus NS1 flanking domain antigen and the fusion moiety and also between several fusion moieties. Such linker sequences may, for example, carry proteolytic cleavage sites.

A further aspect of the invention is an expression vector comprising an operably linked recombinant DNA molecule according to the invention, i.e. a recombinant DNA molecule encoding a flavivirus NS1 flanking domain antigen and optionally a peptidyl-prolyl isomerase chaperone such as an FKBP-chaperone, wherein the FKBP-chaperone is selected from the group consisting of FkpA, SlyD and SlpA. In an alternative embodiment, the recombinant DNA molecule encodes a fusion protein comprising the flavivirus NS1 flanking domain antigen and Skp. Expression vectors comprising recombinant DNA according to the present invention may be used to express flavivirus NS1 flanking domain antigen in a cell-free translation system or may be used to transform host cells for expression of flavivirus NS1 flanking domain antigen according to methods well known in the art. Another aspect of the invention therefore relates to a host cell transformed with an expression vector according to the invention. In one embodiment of the invention, recombinant flavivirus NS1 flanking domain antigens are produced in e.

An additional aspect is a method for generating soluble, stable and immunoreactive flavivirus NS1 flanking domain antigens. The flavivirus NS1 flanking domain antigen may be produced as a fusion protein containing the flavivirus NS1 flanking domain antigen and a chaperone. Preferably, chaperones are used, such as Skp or peptidyl prolyl isomerase class chaperones like FKBP chaperones. In a further embodiment of the invention, the FKBP chaperone is selected from SlyD, FkpA and SlpA.

The method comprises the following steps:

a) Culturing a host cell transformed with the above expression vector containing a gene encoding a flavivirus NS1 flanking domain antigen

b) Expressing the genes encoding the antigens of the flanking domains of the flavivirus NS1

c) Purifying the flavivirus NS1 flanking domain antigen.

Optionally, as an additional step d), it is necessary to perform a functional solubilization so that the flavivirus NS1 flanking domain antigen is brought into a soluble and immunoreactive conformation by means of refolding techniques known in the art.

Yet another embodiment is a method for producing soluble, stable and immunoreactive flavivirus NS1 flanking domain antigens in a cell-free in vitro translation system.

An additional aspect of the invention relates to a method for detecting anti-flavivirus antibodies in an isolated human sample, wherein flavivirus NS1 flanking domain antigens according to the invention are used as binding partners for the antibodies. The present invention thus encompasses a method for detecting antibodies specific for a flavivirus, in particular for a first flavivirus species, in an isolated sample, said method comprising a) forming an immunoreaction mixture by mixing a sample of bodily fluid with flavivirus NS1 flanking domain antigens according to the present invention, b) maintaining said immunoreaction mixture for a period of time sufficient to allow immunoreaction of antibodies to said flavivirus NS1 flanking domain antigens present in said sample of bodily fluid with said flavivirus NS1 flanking domain antigens to form an immunoreaction product; and c) detecting the presence and/or concentration of any of the immunoreaction products.

Throughout the specification, the term "first flavivirus" or "first flavivirus species" means the detection of an antibody specific for one flavivirus species in the presence of an antibody to at least a second or more flavivirus species. Often, patient samples contain not only one flavivirus antibody, but also antibodies from infections that may have occurred in the past. For example, if the first flavivirus species is dengue virus, no antibodies to the second species (like, for example, zika or west nile virus or two (multiple) viruses) are detected by immunoassay.

In one embodiment, the method involves the detection of anti-dengue antibodies using dengue virus type 1-4 NS1 flanking domain antigens (of either individual or all four antigen types) as binding partners for the sample antibodies. In one embodiment, the dengue NS1 flanking domain antigen is a polypeptide selected from the group consisting of SEQ ID No.7, 9, 11, 13, 28, 29, 30 and 31.

In a further aspect, the method is suitable for detecting flavivirus antibodies of the IgG and IgM subclasses or both classes in the same immunoassay. In one embodiment, the flavivirus antibody is an anti-dengue virus type 1-4 antibody.

Immunoassays for the detection of antibodies are well known in the art, and methods and practical applications and procedures for carrying out such assays are also well known in the art. The flavivirus NS1 antigen according to the present invention can be used to improve assays for the detection of anti-flavivirus antibodies independent of the label used and independent of the mode of detection (e.g., radioisotope assay, enzyme immunoassay, electrochemiluminescence assay, etc.) or assay principle (e.g., test strip assay, sandwich assay, indirect test concept or homogeneous assay, etc.).

In one embodiment of the present invention, the immunoassay is a microparticle-based immunoassay using microparticles as a solid phase. As used herein, "particle" means a small, localized object that can be attributed to a physical property such as volume, mass, or average size. The microparticles may thus be of symmetrical, spherical, substantially spherical or spherical shape, or of irregular, asymmetrical shape or form. The size of the particles contemplated by the present invention may vary. In one embodiment, the microparticles used are spherical in shape, for example microparticles having diameters in the nanometer and micrometer range. In one embodiment, the microparticles used in the method according to the present disclosure have a diameter of 50 nanometers to 20 micrometers. In a further embodiment, the microparticles have a diameter of 100nm to 10 μm. In one embodiment, the microparticles used in the method according to the present disclosure have a diameter of 200nm to 5 μm or 750nm to 5 μm.

The microparticles as defined above may comprise or consist of any suitable material known to the person skilled in the art, for example they may comprise or consist essentially of an inorganic or organic material. Generally, they may comprise, consist essentially of, or consist of a metal or an alloy of metals or organic materials, or comprise, consist essentially of, or consist of carbohydrate components. Examples of contemplated particulate materials include agarose, polystyrene, latex, polyvinyl alcohol, silica and ferromagnetic metals, alloys or combinations of materials. In one embodiment, the microparticle is a magnetic or ferromagnetic metal, alloy or composition. In further embodiments, the material may have specific properties, and for example be hydrophobic or hydrophilic. Such particles are typically dispersed in aqueous solutions and retain a small negative surface charge, keeping the particles separated and avoiding non-specific aggregation.

in one embodiment of the invention, the microparticles are paramagnetic microparticles and the separation of such particles is aided by magnetic forces in the measurement method according to the present disclosure. A magnetic force is applied to pull the paramagnetic or magnetic particles out of the solution/suspension and retain them as desired, while the liquid of the solution/suspension may be removed and the particles may be washed, for example.

All biological fluids known to the expert can be used as isolated samples for the detection of anti-flavivirus antibodies, in one embodiment anti-dengue antibodies. The sample generally used is a body fluid like whole blood, serum, plasma, urine or saliva, in one embodiment serum or plasma.

A further embodiment of the invention is an immunoassay for the detection of anti-zika antibodies in an isolated sample, performed according to the so-called double antigen sandwich concept (DAGS). Sometimes, this assay concept is also referred to as a double antigen bridge concept, since the two antigens are bridged by the antibody analyte. In such assays, the ability of an antibody to bind at least two different molecules of a given antigen with its two (IgG, IgE), four (IgA), or ten (IgM) paratopes is required and utilized.

in more detail, the immunoassay for the determination of anti-flavivirus antibodies according to the double antigen bridge format is carried out by incubating a sample containing anti-flavivirus antibodies with two different flavivirus NS1 flanking domain antigens of the same flavivirus, namely a first ("solid phase" or "capture") flavivirus NS1 flanking domain antigen and a second flavivirus NS1 flanking domain antigen ("detection" or "reporter") antigen, each of which specifically binds to the anti-flavivirus antibody. The first antigen may be bound directly or indirectly to a solid phase and typically carries an effector group which is part of a bioaffinity (bioaffine) binding pair. In one embodiment, the anti-flavivirus antibody is an anti-dengue antibody and the two different flavivirus NS1 flanking domain antigens are from the same dengue virus type.

One type of bioaffinity binding pair suitable for the method according to the invention is a hapten and anti-hapten antibody binding pair. Haptens are organic molecules having a molecular weight of 100-. Such small molecules may be rendered immunogenic by coupling them to a carrier molecule and anti-hapten antibodies may be produced according to standard procedures. The hapten may be selected from sterols, bile acids, sex hormones, corticosteroids, cardiac glycosides, cardiac glycoside-glycosides, bufadienolides, steroid-sapogenines and steroid alkaloids, cardiac glycosides and cardiac glycoside-glycosides. Representative of these substance classes are digoxigenin (digoxigenin), digoxigenin (digitoxigenin), hydroxydigoxigenin (gitoxigenin), strophanthin (strophanthin), digoxin (digoxixin), digoxin and strophanthin (strophanthin). Another suitable hapten is, for example, fluorescein. In one embodiment, the bioaffinity binding pair comprises biotin and avidin/streptavidin or digoxin and anti-digoxin.

In yet another embodiment, the first antigen is conjugated to biotin and the complementary solid phase is coated with avidin or streptavidin. The second antigen carries a label which alone or in complex with other molecules confers specific detectable capability to the antigenic molecule. Thus, an immunoreaction mixture is formed comprising the first antigen, the sample antibody and the second antigen. This ternary complex, consisting of an analyte antibody sandwiched between two antigenic molecules, is called an immune complex or immune reaction product. The solid phase to which the first antigen can bind is added before the sample is added to the antigen, or after the immunoreaction mixture is formed. Maintaining the immunoreaction mixture for a period of time sufficient to allow anti-flavivirus antibodies in said sample of bodily fluid directed against said flavivirus NS1 flanking domain antigen to immunologically react with said flavivirus NS1 flanking domain antigen to form an immunoreaction product. The next step is a separation step, in which the liquid phase is separated from the solid phase. Finally, the presence of any of the immunoreaction products is detected in either the solid phase or the liquid phase or both.

In the DAGS immunoassay, the basic structures of the "solid phase antigen" and the "detection antigen" are essentially identical. In the double antigen bridge assay, similar but different flavivirus NS1 flanking domain antigens from the same flavivirus may also be used, which are immunologically cross-reactive. The essential requirement for performing such assays is that the relevant epitope or epitopes are present on both antigens. According to the present invention, the same or different fusion moieties (e.g. SlyD fused to the dengue virus type 1 NS1 flanking domain antigen on the solid phase side and, e.g. FkpA fused to the dengue virus type 1 NS1 flanking domain antigen on the detection side) can be used for each flavivirus NS1 flanking domain antigen, as such changes significantly reduce the problem of non-specific binding and thus the risk of false positive results.

A further embodiment is a method for detecting anti-flavivirus virus antibodies (i.e., immunoglobulins) of class M (IgM detection). In one embodiment of the method, the flavivirus NS1 flanking domain polypeptides as further disclosed above are applied in such a way that multivalent IgM antibodies present in the sample specifically bind to flavivirus NS1 flanking domain antigens. In one embodiment, the flavivirus NS1 flanking domain antigen is provided in multimeric form by chemically cross-linking the antigen or by fusing the antigen to an oligomeric molecule such as an oligomeric chaperone, in one embodiment FkpA or Skp. In another embodiment, the flavivirus flanking domain antigens are present in multiple forms by linking the individual antigens adjacent to each other in tandem. These individual antigenic moieties may also be separated by non-flavivirus specific linker molecules. In a further embodiment, the plurality of flavivirus antigens connected in tandem may additionally be multimerized by an oligomerizing molecule such as an oligomerizing chaperone like for example FkpA or Skp. In yet another embodiment, the flavivirus NS1 flanking domain polypeptides are used in multimeric form, wherein each polypeptide is present in at least a diploid form, in one embodiment, it is present in a triploid to a decaploid form.

in yet another embodiment of the method for the IgM detection of flavivirus-antibodies, the IgM class antibodies present in the sample are bound to a solid phase by means of a so-called μ -capture component, which is generally a binding partner or an antibody fragment that specifically binds to the Fc part of the human IgM molecule, independently of the specificity of the IgM molecule. The μ -capture component carries an effector group (such as biotin), which is a moiety with a bioaffinity pair of avidin or streptavidin. In one embodiment, other bioaffinity pairs may also be used, such as, for example, digoxin and anti-digoxin or additional haptens and anti-haptens as described further above. In one embodiment, the solid phase coated with avidin or streptavidin is then attracted to and binds the μ -capture component. For specific detection of flavivirus-specific antibodies, the flavivirus NS1 flanking domain polypeptides as described are used in labeled form for detection of anti-flavivirus antibodies of the IgM class.

Another embodiment is the use of a flavivirus NS1 flanking domain polypeptide as detailed above for the detection of anti-flavivirus virus antibodies in an in vitro diagnostic test, in an immunoassay method as defined above in one embodiment.

As a further embodiment, the maximum total duration of the immunoassay method for the detection of flavivirus antibodies is less than 1 hour, i.e. less than 60 minutes, in one embodiment less than 30 minutes, in a further embodiment less than 20 minutes, in one embodiment between 15 and 30 minutes, in one embodiment between 15 and 20 minutes. The duration includes the aspiration of the sample and reagents required to perform the assay and the incubation time, optional washing steps, detection steps and also the final output.

An additional subject of the invention is a kit for the detection of anti-flavivirus antibodies comprising the above disclosed flavivirus NS1 flanking domain polypeptides. In one embodiment, the kit comprises in separate containers or in separate compartments of a single container unit at least a microparticle coated with avidin or streptavidin and a flavivirus NS1 flanking domain polypeptide as previously detailed. In another embodiment, the microparticles are coated with one partner of another bioaffinity pair as further described above (such as, for example, digoxin and anti-digoxin, hapten and anti-hapten). In one embodiment, the flavivirus NS1 flanking domain polypeptide is covalently coupled to biotin. In one embodiment, the flavivirus NS1 flanking domain is covalently coupled to a second partner of other bioaffinity pairs, such as, for example, digoxin and anti-digoxin, hapten and anti-hapten. In another embodiment, the flavivirus NS1 flanking domain polypeptide is covalently coupled to a detectable label, in one embodiment to an electrochemiluminescent complex. In further embodiments, chemiluminescent labels, such as, for example, acridinium esters or radioactive or fluorescent compounds or enzymes may also be used as labels. In yet another embodiment, the kit comprises in separate containers or in separate compartments of a single container unit at least a microparticle coated with avidin or streptavidin, a first flavivirus NS1 flanking domain polypeptide covalently coupled to biotin and a second flavivirus NS1 flanking domain polypeptide covalently coupled to a detectable label, such as an electrochemiluminescent ruthenium complex or an electrochemiluminescent iridium complex. In one embodiment, the peptide sequences of the first and second flavivirus NS1 flanking domain polypeptides are identical.

A further embodiment is a kit for the detection of anti-flavivirus antibodies of the IgM class comprising in separate containers or in separate compartments of a single container unit at least microparticles coated with avidin or streptavidin and a μ -capture binding partner covalently coupled to biotin. In further embodiments, the IgM detection kit additionally comprises a flavivirus NS1 flanking domain polypeptide covalently coupled to a detectable label, in one embodiment to an electrochemiluminescent complex.

The term single container unit relates to the fact that: for many automated analyzers, like the analyzer family from Roche diagnostics, the reagents required to measure a certain analyte are provided in the form of "reagent packs", i.e. as one container unit mounted on the analyzer and containing all the key reagents required to measure the target analyte in different compartments.

in addition, the kits defined above contain control and standard solutions and one or more reagents in solution with common additives, buffers, salts, detergents, etc., as used by one of ordinary skill in the art, along with instructions for use.

In yet another aspect, the present invention relates to a method for detecting antibodies against a first flavivirus (or a first flavivirus species) in an isolated biological sample putatively containing antibodies against at least one other, i.e. at least one second flavivirus (or second flavivirus species) different from said virus in the range of antibody detection. For example, the analyte is an antibody against dengue virus ("first flavivirus species"). In this method, a dengue virus NS1 polypeptide comprising the complete or partial sequence of the β -ladder domain is used as specific binding partner, i.e. not only the NS1 flanking domain but the complete NS1 antigen. In this experimental protocol, cross-reactivity against other non-dengue flaviviruses is expected due to the presence of highly conserved β -ladder domain peptide sequences in the specific binding partners. To eliminate this interference, a polypeptide comprising only the NS1 β -ladder domain of the first flavivirus (in this experiment, dengue) was added in an unlabeled form such that cross-reactive antibodies of non-dengue origin (at least one second flavivirus species) were bound and quenched. In one embodiment, a β -ladder domain is added as a quencher, and in a further embodiment, the β -ladder domain polypeptide consists essentially of the amino acid sequence of SEQ ID NO: 24. 25, 26 and 17, and in one embodiment consists of SEQ ID NO: 24. 25, 26 and 17.

Typically, dengue virus types 1-4 cannot be distinguished from each other by serological means. As a result, dengue 1-4 is considered to be a "flavivirus species," dengue.

The following embodiments are also part of the present invention:

detailed description of the preferred embodiments

1. A polypeptide suitable for detecting antibodies to flavivirus in an isolated biological sample comprising flavivirus NS1 flanking domain specific amino acid sequences, wherein no amino acid sequence from the NS1 β -ladder domain of said flavivirus is present in said polypeptide.

2. The polypeptide of embodiment 1, wherein no additional amino acid sequence of the flavivirus is present in the polypeptide.

3. The polypeptide of any one of embodiments 1 or 2, wherein the flavivirus is selected from the group consisting of Zika virus (ZIKV), West Nile Virus (WNV), dengue virus types 1-4 (DENV1-4), tick-borne encephalitis virus (TBEV), Yellow Fever Virus (YFV), Japanese Encephalitis Virus (JEV).

4. The polypeptide according to any one of embodiments 1 to 3 wherein the flavivirus NS1 flanking domain specific amino acid sequence consists essentially of a polypeptide selected from the group consisting of SEQ ID No.1, 2, 5, 7, 9, 11, 13, 15, 17 and 19, in one embodiment selected from the group consisting of SEQ ID No.7, 9, 11, 13 and 15, in one embodiment selected from the group consisting of SEQ ID No.7, 9, 11 and 13 (NS1 domain of dengue virus types 1-4).

5. The polypeptide according to any one of embodiments 1 to 4, wherein the polypeptide is fused to a chaperone.

6. The polypeptide according to any one of embodiments 1 to 5, wherein the chaperone is selected from the group consisting of SlyD, SlpA, FkpA and Skp.

7. The polypeptide of embodiment 6 selected from the group consisting of SEQ ID NO:21 (Zika card), 28(DENV1), 29(DENV2), 30(DENV3) and 31(DENV 4).

8. A method of producing soluble and immunoreactive flavivirus NS1 flanking domain polypeptides, the method comprising the steps of:

a) Culturing a host cell transformed with an expression vector comprising an operably linked recombinant DNA molecule encoding a flavivirus NS1 flanking domain polypeptide according to any one of embodiments 1 to 7,

b) expressing the flavivirus NS1 flanking domain polypeptides, and

c) Purifying the flavivirus NS1 flanking domain polypeptides.

9. Method for the detection of antibodies specific for a first flavivirus species in an isolated sample, wherein flavivirus NS1 flanking domain polypeptides of the first flavivirus species according to any one of claims 1 to 7 are used as capture reagents and/or binding partners for the anti-flavivirus antibodies.

10. a method for detecting an antibody specific for a first flavivirus species in an isolated sample, the method comprising

a) Forming an immunoreaction mixture by mixing a sample of bodily fluid with flavivirus NS1 flanking domain polypeptides of the first flavivirus species according to any one of embodiments 1 to 7

b) Maintaining the immunoreaction mixture for a period of time sufficient to immunoreactive antibodies directed to the flavivirus NS1 flanking domain polypeptide present in a sample of bodily fluid with the flavivirus NS1 flanking domain polypeptide to form an immunoreaction product; and

c) Detecting the presence and/or concentration of any of the immunoreaction products.

11. The method for detecting an antibody specific for a first flavivirus species in an isolated sample according to any of embodiments 9 or 10, wherein the detected antibody is an IgG antibody.

12. The method for detecting antibodies specific for a first flavivirus species in an isolated sample according to embodiments 9 to 11, wherein the immune reaction is performed in a double antigen sandwich format, the method comprising

a) Adding to the sample a first flavivirus NS1 flanking domain polypeptide of a first flavivirus species according to any one of embodiments 1 to 7 and a second flavivirus NS1 flanking domain polypeptide of the first flavivirus species according to any one of embodiments 1 to 7, which first flavivirus NS1 flanking domain polypeptide may be bound directly or indirectly to a solid phase and which first flavivirus NS1 flanking domain polypeptide carries an effector group that is part of a bioaffinity binding pair and which second flavivirus NS1 flanking domain polypeptide carries a detectable marker, wherein the first and second flavivirus NS1 flanking domain polypeptides specifically bind the anti-flavivirus antibody,

b) Forming an immunoreaction mixture comprising the first flavivirus NS1 flanking domain polypeptide, the sample antibody and the second flavivirus NS1 flanking domain polypeptide, wherein a solid phase carrying the corresponding effector group of the bioaffinity binding pair is added before, during or after the formation of the immunoreaction mixture,

c) Maintaining the immunoreaction mixture for a period of time sufficient to immunoreactive flavivirus antibodies directed to the first and second flavivirus NS1 flanking domain polypeptides in a sample of bodily fluid with the first and second flavivirus NS1 flanking domain polypeptides to form an immunoreaction product,

d) Separating the liquid phase from the solid phase

e) Detecting the presence of any of the immunoreaction products in either the solid phase or the liquid phase or both.

13. The method for detecting antibodies specific for a first flavivirus species according to any of embodiments 9 to 12, wherein no antibodies are detected against flavivirus species other than the first flavivirus species.

14. The method for detecting antibodies specific for a first flavivirus species according to any of embodiments 9 to 13, wherein the first flavivirus species is dengue virus, in one embodiment each individual dengue virus type 1-4, in one embodiment all dengue virus types 1-4.

15. The method for detecting an antibody specific for a first flavivirus species according to any of embodiments 9 to 13, wherein the first flavivirus species is West Nile Virus (WNV).

16. The method for detecting an antibody specific for a first flavivirus species according to any one of embodiments 9 to 13, wherein the first flavivirus species is tick-borne encephalitis virus (TBEV).

17. The method for detecting antibodies specific for a first flavivirus species according to any of embodiments 9 to 13, wherein the first flavivirus species is Yellow Fever Virus (YFV).

18. The method for detecting an antibody specific for a first flavivirus species according to any one of embodiments 9 to 13, wherein the first flavivirus species is Japanese Encephalitis Virus (JEV).

19. The method for detecting antibodies specific for a first flavivirus species according to any of embodiments 12 to 18, wherein the first flavivirus NS1 flanking domain polypeptide carries a biotin moiety and the second flavivirus NS1 flanking domain polypeptide is labeled with an electrochemiluminescent moiety, in one embodiment a ruthenium or iridium complex.

20. The method for detecting antibodies specific for a first flavivirus species in an isolated sample according to any of embodiments 9 to 10, wherein the detected antibodies are IgM antibodies.

21. the method for detecting antibodies of the IgM class specific for a first flavivirus species according to embodiment 20, wherein the flavivirus NS1 flanking domain polypeptides are used in multimeric form, in one embodiment wherein the polypeptides are present in at least a diploid form, in one embodiment a triploid to a decaploid form.

22. The method according to any one of embodiments 9 to 10, wherein the detected antibodies are IgM antibodies, and wherein the IgM antibodies are captured on a solid phase by a μ -capture binding partner.

23. The method for detecting IgM antibodies specific for a first flavivirus species in an isolated sample according to any one of embodiments 20 to 22, wherein the immune reaction is carried out in a μ -capture format, the method comprising:

a) Adding to said sample a μ -capture binding partner that can bind directly or indirectly to a solid phase and which carries an effector group that is part of a bioaffinity binding pair,

And a flavivirus NS1 flanking domain polypeptide according to any one of embodiments 1 to 6, and which flavivirus NS1 flanking domain polypeptide carries a detectable label,

Wherein the mu-capture binding partner specifically binds to the Fc portion of a human IgM antibody and the flavivirus NS1 flanking domain polypeptide specifically binds to the anti-flavivirus antibody,

b) Forming an immunoreaction mixture comprising said mu-capture binding partner, said sample antibody and said flavivirus NS1 flanking domain polypeptide, wherein a solid phase carrying the corresponding effector group of said bioaffinity binding pair is added before, during or after the formation of the immunoreaction mixture,

c) Maintaining the immunoreaction mixture for a period of time sufficient to immunoreactive IgM antibodies directed to the flavivirus NS1 flanking domain polypeptides with the flavivirus NS1 flanking domain polypeptides in a sample of bodily fluid to form an immunoreaction product,

d) Separating the liquid phase from the solid phase,

e) Detecting the presence of any of the immunoreaction products in the solid phase or the liquid phase or both.

24. The method according to any one of embodiments 9 to 23, wherein the method does not use a flavivirus NS1 polypeptide from the β -ladder domain, in one embodiment does not use a polypeptide comprising an amino acid sequence according to SEQ ID NO: 4. 24, 25, 26, 27, or a pharmaceutically acceptable salt thereof.

25. Use of a flavivirus NS1 flanking domain polypeptide according to any one of embodiments 1 to 7 in an in vitro diagnostic test for the detection of an anti-flavivirus antibody.

26. Use of the flavivirus NS1 flanking domain polypeptide according to any one of embodiments 1 to 7 in an in vitro diagnostic test for the detection of an anti-flavivirus antibody according to any one of the methods of embodiments 8 to 23.

27. The use of the flavivirus NS1 flanking domain polypeptide according to any one of embodiments 25 to 26, wherein the flavivirus is selected from Zika virus (ZIKV), West Nile Virus (WNV), dengue virus types 1-4 (DENV1-

4) Tick-borne encephalitis virus (TBEV), Yellow Fever Virus (YFV), Japanese Encephalitis Virus (JEV), in one embodiment selected from dengue virus types 1-4 (DENV1-4) and West Nile Virus (WNV), in one embodiment wherein the flavivirus is dengue virus type 1-4 (DENV 1-4).

28. The use of the flavivirus NS1 flanking domain polypeptide according to embodiment 27, wherein the NS1 flanking domain specific amino acid sequence consists of a polypeptide selected from the group consisting of SEQ ID No.1, 2, 5, 7, 9, 11, 13, 15, 17 and 19, in one embodiment from the group consisting of SEQ ID No.7, 9, 11, 13 and 15, and in one embodiment from the group consisting of SEQ ID No.7, 9, 11 and 13 (NS1 domain of dengue virus types 1-4).

29. A kit for detecting an anti-flavivirus antibody comprising a flavivirus NS1 flanking domain polypeptide according to any one of embodiments 1 to 7, in one embodiment comprising instructions for using the kit.

30. The kit of embodiment 29 comprising in separate containers or in separate compartments of a single container unit at least a microparticle coated with avidin or streptavidin and a flavivirus NS1 flanking domain polypeptide according to any of embodiments 1 to 7 covalently coupled to biotin.

31. The kit according to embodiment 30, comprising at least microparticles coated with one partner of a bioaffinity pair, such as a hapten/anti-hapten, and the polypeptide according to any one of embodiments 1 to 7, wherein the bioaffinity pair is a hapten/anti-hapten, in one embodiment digoxin/anti-digoxin, in separate containers or in separate compartments of a single container unit.

32. The kit of embodiment 29, further comprising a second polypeptide according to any one of embodiments 1 to 7, said second polypeptide carrying a detectable label.

33. The kit according to embodiment 29, comprising at least microparticles coated with avidin or streptavidin and a μ -capture binding partner covalently coupled to biotin in separate containers or in separate compartments of a single container unit.

34. The kit of embodiment 29, wherein the flavivirus NS1 flanking domain polypeptides carry a detectable label.

35. A method for detecting antibodies to a first flavivirus in an isolated biological sample putatively containing antibodies to at least one second flavivirus different from said first flavivirus by using a flavivirus NS1 polypeptide comprising the complete or partial sequence of the β -ladder domain as a specific binding partner, wherein cross-reactivity to at least one second flavivirus different from said first flavivirus is eliminated by: adding a polypeptide comprising the NS1 β -ladder domain of the flavivirus in unlabeled form as a quencher, and in one embodiment, adding the polypeptide comprising the β -ladder domain as a quencher.

36. Use of a flavivirus NS1 β -ladder domain polypeptide as an agent for reducing interference in an immunoassay for the detection of an anti-flavivirus antibody.

37. The use of embodiment 36, wherein the β -ladder domain polypeptide is selected from the group consisting of SEQ ID NOs: 4. 24, 25, 26 and 27.

The invention is further illustrated by the examples.