阅读说明：本技术 在血液中的循环细胞生物标记在检测和诊断疾病中的应用及其分离方法 (Application of circulating cell biomarker in blood in detecting and diagnosing diseases and separation method thereof ) 是由 汤家楣 D.亚当斯 于 2015-08-25 设计创作，主要内容包括：鉴定血液中的实体瘤和病毒感染的新的敏感细胞生物标记。这种生物标记可被用来确定癌、肉瘤和病毒的存在,快速测定治疗反应,早期检出癌症,早期检出癌症的复发,并可用来确定疗法。(Novel sensitive cell biomarkers for solid tumors and viral infections in blood were identified. Such biomarkers can be used to determine the presence of carcinomas, sarcomas, and viruses, to rapidly measure response to therapy, to detect cancer early, to detect recurrence of cancer early, and to determine therapy.)

1. A companion diagnostic method for screening for a selected drug target marker in circulating cancer-associated macrophage-like Cells (CAMLs) and/or Circulating Tumor Cells (CTCs) comprising collecting CAMLs and/or CTCs from a biological sample obtained from a subject and determining whether the CAMLs and/or CTCs express or have the selected drug target marker.

2. The method of claim 1, wherein the selected drug target marker is a cell surface marker.

3. The method of claim 2, wherein the cell surface marker is PD-L1.

4. The method of claim 1, wherein the selected drug target marker is a polynucleotide.

5. The method of claim 1, wherein the selected drug target marker is a gene mutation, amplification or translocation.

6. Use of a reagent that detects circulating cancer-associated macrophage-like Cells (CAMLs) in the manufacture of a diagnostic reagent for screening a subject for cancer, comprising detecting CAMLs in a biological sample from the subject, wherein the subject has cancer when CAMLs are detected, and wherein the selected CAMLs are characterized by (i) a number of CAMLs and (ii) an average size of CAMLs.

7. The use of claim 6, wherein when CAMLs are detected in the biological sample, the subject is identified as potentially having a carcinoma, sarcoma, neuroblastoma, melanoma, or other solid tumor.

8. The use of claim 6, wherein when CAMLs are detected in the biological sample, the subject is identified as having a carcinoma, sarcoma, neuroblastoma, melanoma, or other solid tumor.

9. The use of claim 6, further comprising detecting Circulating Tumor Cells (CTCs) and/or White Blood Cells (WBCs) bound to CTCs in the biological sample.

10. Use of an agent that detects circulating cancer-associated macrophage-like Cells (CAMLs) in the preparation of a diagnostic agent for diagnosing cancer in a subject, comprising detecting CAMLs in a biological sample from the subject, wherein the subject is diagnosed with cancer when CAMLs are detected in the biological sample, and wherein the selected CAMLs are characterized by (i) a number of CAMLs and (ii) an average size of the CAMLs.

11. The use of claim 10, further comprising detecting CTCs and/or WBCs bound to CTCs in the biological sample, wherein when one or more of CAMLs, CTCs, and WBCs bound to CTCs are detected in the biological sample, the subject is diagnosed with cancer.

12. Use of an agent that detects circulating cancer-associated macrophage-like Cells (CAMLs) in the manufacture of a diagnostic agent for detecting cancer recurrence in a subject, comprising detecting CAMLs in a biological sample from a subject that has been previously treated for cancer, wherein cancer recurrence is detected when CAMLs are detected in the biological sample, and wherein the selected CAMLs are characterized by (i) a number of CAMLs and (ii) an average size of the CAMLs.

13. The use of claim 12, further comprising detecting CTCs and/or WBCs bound to CTCs in the biological sample, wherein when one or more of CAMLs, CTCs, and/or WBCs bound to CTCs are detected in the biological sample, cancer recurrence is detected.

14. Use of an agent that detects circulating cancer-associated macrophage-like Cells (CAMLs) in the preparation of a diagnostic agent for confirming diagnosis of cancer in a subject, comprising detecting CAMLs in a biological sample from a subject diagnosed with cancer, wherein diagnosis of cancer in the subject is confirmed when CAMLs are detected in the biological sample, and wherein the selected CAMLs are characterized by (i) a number of CAMLs and (ii) an average size of the CAMLs.

15. The use of claim 14, further comprising detecting CTCs and/or WBCs bound to CTCs in the biological sample, wherein when one or more of CAMLs, CTCs, and/or WBCs bound to CTCs are detected in the biological sample, a diagnosis of cancer in the subject is confirmed.

16. The use of claim 14 or 15, wherein the preliminary cancer diagnosis is by mammography, PSA testing, presence of CA125, CT, MRI or PET imaging.

17. The use of claim 7, 8, 10, 11, 12, 13, 14 or 15, further comprising determining the identity of the cancer by staining said CAMLs for selected cancer markers.

18. The use of claim 17, wherein the staining further comprises quenching and re-staining the same cells for additional cancer markers.

19. The use of claim 6, 10, 12 or 14, wherein the CAMLs are captured using one or more means selected from the group consisting of: size exclusion methods, red blood cell lysis, FICOLL, microfluidic chips, and flow cytometry, or combinations thereof.

20. The use of claim 19, wherein the size exclusion method comprises the use of a microfilter having a pore size of about 15-20 microns.

21. The use of claim 20, wherein the microfilter has a precise pore geometry and a uniform pore distribution.

22. The use of claim 9, 11, 13 or 15, wherein CAMLs, CTCs and/or WBCs bound to CTCs are detected simultaneously using a microfilter having a pore size of about 7-8 microns.

23. The use of claim 22, wherein the microfilter has a precise pore geometry and a uniform pore distribution.

24. The use of claim 6, 10, 12 or 14, wherein the CAMLs are captured using a microfluidic chip based on: sorting based on physical size; sorting based on hydrodynamic size; grouping, trapping, immunocapture, concentrating large cells, or eliminating small cells, depending on size.

25. The use of claim 6, 10, 12, or 14, wherein CAMLs are captured using a CellSieve ™ low-pressure microfiltration assay.

26. The use of claim 6, 10, 12 or 14, wherein the biological sample is one or more selected from the group consisting of peripheral blood, lymph nodes, bone marrow, cerebrospinal fluid, tissue and urine.

27. The use of claim 6, 10, 12 or 14, wherein the cancer is a solid tumor.

28. The use of claim 6, 10, 12 or 14, wherein the cancer is stage I, stage II, stage III or stage IV cancer.

29. The use of claim 6, 10, 12 or 14, wherein the cancer is an epithelial cell cancer, including breast, prostate, lung, pancreatic or colorectal cancer.

Technical Field

The present invention relates generally to the discovery and characterization of biomarkers in blood and other body fluids that can be used to screen subjects for the presence of solid tumors, to aid in the selection of courses of cancer therapy, to monitor the efficacy of cancer therapy, and to detect and monitor subjects for viral infection, cancer screening, early detection of cancer recurrence, among other important goals. The biomarkers of the invention can be used alone or in combination with circulating tumor cells, free plasma and serum DNA cancer markers, cancer-associated protein markers, and other biomarkers.

RELATED ART

When tumor cells detach from a primary solid tumor, they infiltrate into the blood or lymphatic circulation and eventually leave the blood stream to enter other organs or tissues to form metastases. 90% of cancer-related deaths are caused by the metastatic process. The most common sites of metastasis are the lung, liver, bone and brain. Tumor cells found in the circulation are called Circulating Tumor Cells (CTCs). Many research publications and clinical trials have shown that CTC has clinical utility in: (i) providing prognostic survival and cancer recurrence information by enumeration of CTCs in the bloodstream, and (ii) providing therapeutic information by examining protein expression levels in CTCs, as well as the occurrence of gene mutations and translocations. However, CTCs are not consistently associated with the occurrence and/or presence of cancer in a subject (even a stage IV cancer patient).

In addition to cancer, there are many medical conditions that can be diagnosed by detecting certain cell types in body fluids. In particular, cells indicative of or characteristic of certain medical conditions may be more and/or less adaptive than other cells found in a selected bodily fluid. Thus, by collecting such more and/or less adapted cells from a sample of a bodily fluid, it is possible to diagnose a medical condition based on the collected cells.

The identification and characterization of biomarkers in blood and other bodily fluids that can be used to screen a subject for a medical condition would provide additional tools to clinicians. The present invention is directed to this and other important ends.

And (4) background.

SUMMARY

The present invention relates to and discloses a class of cells with unique characteristics found in the blood of cancer patients with solid tumors, including carcinomas, sarcomas, neuroblastoma and melanoma. Cells, referred to as "circulating cancer-associated macrophage-like cells" (CAMLs), are described and shown herein to be associated with the presence of a solid tumor in a patient. 5 morphologies associated with CAML have been characterized and described (Adams, D. et al, Circulating giant macrophages as a potential biomarker of solid tumors)PNAS2014, 111(9):3514-3519 and WO 2013/181532). With the data presented herein, CAML displays have clinical utility, i.e., they can be used as biomarkers for a variety of medical applications. CAMLs are consistently found in peripheral blood of subjects with stage I-IV cancers of epithelial origin by microfiltration using a precision microfilter. Additional CAML morphologies found in the blood of cancer patients are proposed herein.

Medical applications related to CAMLs include, but are not limited to, the use of cells as biomarkers to provide diagnosis of cancer, particularly in early detection of cancer, in early detection of cancer recurrence or recurrence, and in the determination of cancer mutations. CAMLs can also be used as biomarkers in determining an appropriate course of treatment; in particular, the cells can be used for the rapid determination of the efficacy of chemotherapeutic and radiotherapeutic treatment responses.

CAMLs can be used as cancer markers on their own, or in combination with CTCs, cell-free DNA, proteins, and other biomarkers to provide a more comprehensive understanding of a patient's disease.

More particularly, and in a first embodiment, the present invention relates to a method of screening for cancer in a subject comprising detecting CAMLs in a biological sample obtained from the subject. In particular aspects, when CAMLs are detected in a biological sample, the subject is identified as likely to have a solid tumor, such as a carcinoma, sarcoma, neuroblastoma, or melanoma, among others. In other aspects, when CAMLs are detected in a biological sample, the subject is identified as having a solid tumor, e.g., a carcinoma, sarcoma, neuroblastoma, or melanoma, among others. Identification of a particular type of cancer can be performed by standard methods, such as staining for cancer markers. One useful attribute of CAMLs is that they can undergo quenching and re-staining, so that a large number of cancer cell markers can be determined using the same cell sample. The identification of a particular type of cancer can therefore also be performed by staining for cancer markers and then re-staining the same cells for additional markers. In certain aspects, the methods encompassed by this embodiment also include detecting Circulating Tumor Cells (CTCs) and/or White Blood Cells (WBCs) bound to CTCs in the biological sample. In particular aspects of this embodiment, the subject is a subject suspected of having cancer. In particular aspects of this embodiment, treatment decisions are made based on the results of the method. In particular aspects of this embodiment, the method further comprises administering to the subject an anti-cancer therapy when the subject is identified as having a solid tumor.

In a second embodiment, the invention relates to a method of diagnosing cancer in a subject comprising detecting CAMLs in a biological sample obtained from the subject, wherein the subject is diagnosed with cancer when CAMLs are detected in the biological sample. Identification of a particular type of cancer can be performed by standard methods, such as staining for cancer markers. Identification of a particular type of cancer can also be performed by staining for cancer markers and then re-staining the same cells for additional markers. In certain aspects, the methods encompassed by this embodiment also include detecting CTCs and/or WBCs bound to CTCs in the biological sample, wherein when one or more of CAMLs, CTCs, and WBCs bound to CTCs are detected in the biological sample, the subject is diagnosed with cancer. In particular aspects of this embodiment, treatment decisions are made based on the results of the method. In particular aspects of this embodiment, the method further comprises administering an anti-cancer therapy to the subject when the subject is diagnosed with cancer.

In a third embodiment, the invention relates to a method of detecting cancer recurrence in a subject, comprising detecting CAMLs in a biological sample from a subject previously treated for cancer, wherein when CAMLs are detected in the biological sample, cancer recurrence is detected. Identification of a particular type of cancer can be performed by standard methods, such as staining for cancer markers. Identification of a particular type of cancer can also be performed by staining for cancer markers and then re-staining the same cells for additional markers. In certain aspects, the methods encompassed by this embodiment also include detecting CTCs and/or WBCs bound to CTCs in the biological sample, wherein when one or more of CAMLs, CTCs, and WBCs bound to CTCs are detected in the biological sample, a cancer recurrence is detected. In particular aspects of this embodiment, treatment decisions are made based on the results of the method. In particular aspects of this embodiment, the method further comprises administering an anti-cancer therapy to the subject when recurrence of the cancer is detected.

In a fourth embodiment, the invention relates to a method of confirming a diagnosis of cancer in a subject, comprising detecting CAMLs in a biological sample obtained from a subject diagnosed with cancer, wherein when CAMLs are detected in the biological sample, a diagnosis of cancer in the subject is confirmed. In certain aspects, the methods encompassed by this embodiment also include detecting CTCs and/or WBCs bound to CTCs in the biological sample, wherein when one or more of CAMLs, CTCs, and WBCs bound to CTCs are detected in the biological sample, a diagnosis of cancer in the subject is confirmed. In particular aspects, the preliminary cancer diagnosis is by mammography, PSA testing, the presence of CA125, CT, MRI, or PET imaging. In a particular aspect, the subject is suspected of having cancer. Identification of a particular type of cancer can be performed by standard methods, such as staining for cancer markers. Identification of a particular type of cancer can also be performed by staining for cancer markers and then re-staining additional markers on the same cells. In particular aspects of this embodiment, treatment decisions are made based on the results of the method. In particular aspects of this embodiment, the method further comprises administering an anti-cancer therapy to the subject when the diagnosis of cancer in the subject is confirmed.

In the first to fourth embodiments of the invention, the detection of WBCs bound to CTCs is a determination of the number of WBCs bound to CTCs. When CTCs infiltrate into the circulation, immune cells (T-cells, a subset of leukocytes) can recognize them by binding to CTCs; immune cells can also kill CTCs. Filtering the blood may capture leukocytes (WBCs) bound to CTCs. CTCs can be degraded. The presence and/or number of WBCs bound to CTCs in a biological sample is such an indication of the presence of a solid tumor and is also the body's ability to eliminate the solid tumor. In certain aspects, WBCs that bind to CTCs in the biological sample are T cells.

In a fifth embodiment, the invention relates to a method of determining the cancer stage in a subject comprising characterizing CAMLs in a biological sample obtained from a subject having cancer, wherein selected characteristics of the CAMLs are indicative of the cancer stage of the subject. Identification of a particular type of cancer can be performed by standard methods, such as staining for cancer markers. Identification of a particular type of cancer can also be performed by staining for cancer markers and then re-staining additional markers on the same cells. In certain aspects, the methods encompassed by this embodiment also include characterizing CTCs in the biological sample, wherein selected characteristics of the CAMLs and CTCs are indicative of the cancer stage of the subject. In certain aspects, CAMLs and/or CTCs are collected from a biological sample and then characterized. In particular aspects of this embodiment, treatment decisions are made based on the results of the method. In particular aspects of this embodiment, the method further comprises administering to the subject an anti-cancer therapy after determining the stage of the cancer in the subject.

In a sixth embodiment, the invention relates to a method of monitoring the efficacy of a cancer treatment, comprising (a) determining a characteristic of one or more selected CAMLs in a biological sample from a subject undergoing a cancer treatment, and (b) comparing a determination of the one or more selected characteristics determined in (a) to a determination of the same characteristic determined in a similar biological sample from the same subject at one or more time points prior to, during, or after completion of the treatment, wherein a change in the one or more determinations is indicative of the efficacy of the cancer treatment in the subject. In certain aspects, the methods encompassed by this embodiment also include (a) determining one or more selected characteristics of CTCs in the biological sample, and (b) comparing the determined value of the one or more selected characteristics determined in (a) to the determined value of the same characteristic determined in a similar biological sample obtained from the same subject at one or more time points prior to, during, or after completion of the treatment. In certain aspects, CAMLs and/or CTCs are collected from a biological sample and then characterized. In particular aspects of this embodiment, treatment decisions are made based on the results of the method.

In the fifth and sixth embodiments, the characteristics of the selected CAMLs in the sample are one or more characteristics selected from the group consisting of:

(i) number of CAMLs;

(ii) average size of CAMLs (CAML cells range in size from about 20 microns to about 300 microns in diameter);

(iii) average size of CAML nuclei (CAML has large atypical nuclei about 14-64 μm in diameter);

(iv) morphological shape of CAMLs (CAML shape includes spindle, tadpole, circle, ellipse, two legs, more than two legs, thin legs, or amorphous);

(v) a CD14 positive phenotype;

(vi) the extent of CD45 expression;

(vii) the degree of EpCAM expression;

(viii) the degree of vimentin expression;

(ix) the degree of PD-L1 expression;

(x) The extent of monocyte CD11C marker expression;

(xi) The degree of endothelial CD146 marker expression;

(xii) The degree of endothelial CD202b marker expression;

(xiii) The degree of endothelial CD31 marker expression;

(xiv) The location of the marker (the location marker appears in the CAMLs, e.g., cytoplasm versus nucleus, which may vary at different time points);

(xv) The presence of one or more markers associated with cancer in CAMLs, wherein the markers are diffuse, or associated with vacuoles and/or ingested material (e.g., for epithelial cancers, the markers are cytokeratins 8, 18, and 19); and

(xvi) Intensity of marker staining.

In a fifth and sixth embodiment, the characteristics of the selected CTCs in the sample are one or more characteristics selected from the group consisting of:

(i) the number of CTCs;

(ii) the number of WBCs bound to CTCs;

(iii) the state of the core;

(iv) the extent of cytokeratin 8 expression;

(v) the degree of cytokeratin 18 expression;

(vi) the extent of cytokeratin 19 expression;

(vii) the degree of EpCAM expression;

(viii) the degree of vimentin expression;

(ix) the degree of PD-L1 expression;

(x) The degree of uroplakin expression;

(xi) Cytokeratin morphology;

(xii) The location of the marker (the location marker is present in CTCs, e.g., cytoplasmic versus nuclear, and can vary at different time points); and

(xiii) Intensity of marker staining.

In fifth and sixth embodiments, the number of CAMLs, CTCs, and/or WBCs bound to CTCs is determined simultaneously using a microfilter. Suitable microfilters may have a variety of pore sizes and shapes. In one aspect, the microfilter has pore sizes ranging in size from about 5 microns to about 10 microns in size and may include circular, racetrack, oval, square, and rectangular pore shapes. In a preferred aspect, the microfilter has a precise pore geometry and a uniform pore distribution.

The invention also relates to methods of isolating CAMLs and/or CTCs from a biological sample and enumerating the isolated cells using a camera, such as a cell phone camera, or a white light microscope, or a camera coupled to a white light microscope. Accordingly, and in a seventh embodiment, the present invention relates to a method of detecting CAMLs and/or CTCs in a biological sample, comprising obtaining a biological sample from a subject, and detecting CAMLs and/or CTCs in the sample, wherein the detecting is by a camera or a white light microscope, or a camera attached to a white light microscope. In certain aspects, the camera is a cell phone camera. In certain aspects, the white light microscope has a magnification of 10x or less. In other aspects, cells are collected from the biological sample through a low cost filter and/or the biological sample is obtained from the subject by manual aspiration or a low cost pump. In a further aspect, colorimetric staining is used to visualize CAMLs and/or CTCs.

The invention also relates to methods of using CAMLs and/or CTCs as chaperone diagnostics. Companion diagnostics is a useful tool for matching drugs to specific treatments by evaluating the staining of markers for drug targets, evaluating gene amplification or translocation via FISH, and using other molecular analyses for drug-related specific gene mutations, etc. The cells can function as a surrogate for tissue biopsy to determine whether certain therapies may be effective in treating a subject having a disease, such as cancer. For example, the cells can be used to screen immunotherapy to determine whether a cancer expresses a protein recognized by a given immunotherapy (e.g., an antibody). The cells can also be analyzed to determine whether the cells express certain polynucleotides or whether selected mutations are found in the cellular DNA. As noted herein, CAMLs and CTCs often express or have the same cancer markers as the cancer from which they are derived. Accordingly, and in an eighth embodiment, the present invention is directed to a companion diagnostic method for screening for a selected drug target marker in CAMLs and/or CTCs comprising collecting CAMLs and/or CTCs from a biological sample obtained from a subject and determining whether the CAMLs and/or CTCs express or have the selected drug target marker. In certain aspects, the drug target marker is a cell surface marker, and the assay can be, for example, by staining the marker. As an example, PD-L1 may be used as a cell surface marker for immunotherapy. In other aspects, the drug target marker is a polynucleotide. In a further aspect, the drug target marker is a gene mutation, amplification or translocation and the assay can be, for example, by FISH.

Traditional methods for the detection of viruses in blood are based on the presence of antibodies or virus-infected cells. Since CAMLs are a type of immune cell, they can also be used for detection in the diagnosis of a range of viral infections, such as Human Immunodeficiency Virus (HIV), Hepatitis B Virus (HBV), epstein-barr virus (EBV), and more. Indeed, CAMLs have been found in the blood of subjects with active phase viral infections. CAMLs phagocytose viral debris, cells infected with a virus, or viral debris containing a virus. One can stain directly the viral markers in CAMLs or perform molecular analysis of DNA or RNA in CAMLs associated with viruses. Thus, CAMLs can also be used as biomarkers to provide detection and diagnosis of active viral infection and to determine an appropriate course of treatment.

Moreover, some viral infections such as HIV and HBV can lead to cancer. CAMLs found in the blood of those patients can be caused by viral infection or by the cancer itself. Staining for cancer markers or for viral markers can be used to provide diagnostic information. This may also be a useful method for early detection of virus-induced cancer.

Accordingly, and in a ninth embodiment, the present invention relates to a method of diagnosing a viral infection in a subject, comprising collecting CAMLs from a biological sample obtained from the subject and screening the collected CAMLs for a virus. In certain aspects, the screening is by staining CAMLs for viral markers. Additional viral markers can also be restained on the same cells. In a further aspect, the screening is by molecular analysis of DNA or RNA derived from CAMLs. In particular aspects of this embodiment, treatment decisions are made based on the results of the method. In particular aspects of this embodiment, the method further comprises administering to the subject an anti-viral therapy when the viral infection is diagnosed.

In a further embodiment, the invention includes a method of molecular analysis of CAMLs comprising obtaining individual CAML cells and performing molecular analysis on the individual cells. There is no limitation on the specific type of molecular analysis, which can be performed on a single cell, and such methods include, but are not limited to, nucleic acid sequencing, northern blot analysis, and southern blot analysis.

In related aspects and embodiments of the invention, the biological sample is one or more selected from the group consisting of peripheral blood, lymph nodes, bone marrow, cerebrospinal fluid, tissue, and urine. The sample may be a fresh sample or a thawed freeze-preserved sample. In a preferred aspect, the biological sample is peripheral blood. In other aspects, the blood is antecubital-venous blood, inferior vena cava blood, or jugular venous blood.

In related aspects and embodiments of the invention, the cancer is one or more of a solid tumor, stage I cancer, stage II cancer, stage III cancer, stage IV cancer, carcinoma, sarcoma, neuroblastoma, melanoma, epithelial cell carcinoma, breast cancer, prostate cancer, lung cancer, pancreatic cancer, colorectal cancer, and other solid tumor cancers.

In related aspects and embodiments of the invention, the anti-cancer therapy may be one or more of chemotherapy, radiation therapy, immunotherapy, vaccine therapy, targeted therapy, and/or a combination of therapies.

In related aspects and embodiments of the invention, CAMLs are detected and/or collected using one or more methods selected from the group consisting of: size exclusion methods, immunocapture, red blood cell lysis, leukocyte depletion, FICOLL, electrophoresis, dielectrophoresis, flow cytometry and microfluidic chips, or combinations thereof. In a particular aspect, the size exclusion method comprises the use of a microfilter. Suitable microfilters may have a variety of pore sizes and shapes. When CAMLs are detected and/or collected alone, the pore size can range from about 15 microns to about 20 microns. When both CAMLs and CTCs are detected and/or collected, the pore size may range from about 5 microns to about 10 microns. The larger pore size will eliminate most of the WBC contaminants on the filter. The holes may have the shape of circular, racetrack, oval, square and rectangular holes. In a preferred aspect, the microfilter has a precise pore geometry and a uniform pore distribution. In a particular aspect, CAMLs use microfluidic chips based on: sorting based on physical size; sorting based on hydrodynamic size; grouping, trapping, immunocapture, concentrating large cells, or eliminating small cells, depending on size. In a particular aspect, CAMLs are detected and/or collected using a CellSieve ™ low-pressure microfiltration assay.

Brief Description of Drawings

A more complete appreciation of the present invention and many of the attendant advantages thereof will be readily obtained as the same becomes better understood by reference to the following detailed description when considered in connection with the accompanying drawings, wherein:

FIGS. 1A-1I show a set of graphs of circulating cancer-associated macrophage-like cells found in the blood of cancer patients. The merged color images were generated from DAPI (blue), CK 8, 18, and 19 (green), EpCAM (red), and CD45 (purple).

FIGS. 2A-2F show CAMLs with phagocytosed DNA fragments at the tail.

FIGS. 3A-3F show CAMLs during phagocytosis of DNA fragments.

FIGS. 4A-4F show CAMLs during phagocytosis of cytoplasmic fragments.

FIGS. 5A-5F show CAMLs with 4 phagocytosed leukocytes.

FIGS. 6A-6F show CAMLs with 2 phagocytosed leukocytes.

FIGS. 7A-7F show CAMLs in fission.

FIGS. 8A-8F show two CAMLs after splitting.

FIGS. 9A-9F show two CAMLs after splitting.

FIGS. 10A-10F show CAMLs with two lower arms.

FIGS. 11A-11F show CAMLs with both legs on the same side.

FIGS. 12A-12F show CAMLs with both legs on the same side.

FIGS. 13A-13F show CAMLs with very thin legs and fairly regular nuclei.

FIGS. 14A-14F show CAMLs isolated from subjects with viral infections.

FIGS. 15A-15F show WBCs bound to CTCs from breast cancer patients.

FIGS. 16A-16F show WBCs bound to CTCs from breast cancer patients.

FIGS. 17A-17F show WBCs bound to CTCs from breast cancer patients.

FIGS. 18A-18F show WBCs bound to CTCs from breast cancer patients.

FIGS. 19A-19F show WBCs bound to CTCs from bladder cancer patients.

FIGS. 20A-20F show WBCs bound to CTCs from bladder cancer patients.

FIGS. 21A-21F show WBCs bound to CTCs from bladder cancer patients.

FIGS. 22A-22F show WBCs bound to CTCs from renal cancer patients.

FIGS. 23A-23F show WBCs bound to CTCs from renal cancer patients.

FIGS. 24A-24F show WBCs bound to CTCs from renal cancer patients.

FIGS. 25A-25F show WBCs bound to CTCs from renal cancer patients.

FIGS. 26A-26F show WBCs bound to CTCs from renal cancer patients.

FIGS. 27A-27F show WBCs bound to CTCs from renal cancer patients.

FIGS. 28A-28F show WBCs bound to CTCs from renal cancer patients.

Figure 29 shows the frequency of CTCs and CAMLs in 105 breast, prostate, pancreatic and lung cancer patients and 30 healthy controls.

Figure 30 shows the frequency of CAMLs in different stages of cancer from 105 patients with breast, prostate, pancreatic and lung cancer.

Figure 31 shows CAML numbers after treatment.

Figure 32 shows CAML numbers for pre-operative clinical assessments.

Fig. 33A-33B show CAML numbers based on pathological evaluation, fig. 33A shows pathology confirmation numbers and fig. 33B shows cell size changes of 4 different stages of cancer.

FIG. 34 shows re-staining of CAMLs.

FIG. 35 shows the effect of radiation therapy on the cancer marker RAD50 on CAML.

FIG. 36 shows the effect of radiation therapy on the cancer markers RAD50 and PD-L1 on CTC.

Figure 37 shows the reduction in CAML numbers over time following cancer treatment.

FIG. 38 shows the decrease in CAML size over time.

Figures 39A-39E show CAMLs strongly stained for PD-L1, with vimentin (max S-N = 880); PDL1 (max S-N = 880); CD45 (max S-N = 850); and the length is 107 mu m.

Figures 40A-40E show CAMLs weakly stained for PD-L1, with vimentin (max S-N = 500); PDL1 (max S-N = 280); CD45 (max S-N = 820); length 62 μm.

Figures 41A-41E show CAMLs staining very weakly to PD-L1, with vimentin (max S-N = 75); PDL1 (max S-N = 100); CD45 was weak (max S-N = 145). The bright PDL1 spot is 1000; CD45 is not smooth; length-74 μm.

FIGS. 42A-42D show colorimetric staining of CAMLs.

Detailed Description

The matters defined in the description such as a detailed construction and elements are provided only to assist in a comprehensive understanding of the invention. Accordingly, one of ordinary skill in the art will recognize that various changes and modifications of the embodiments described herein can be made without departing from the scope or spirit of the invention.

Cancer is the most dreaded disease in the world, affecting all populations and ethnicities in all countries. In the united states alone, there are over a thousand two million cancer patients, with one hundred and seventy million new cancer cases per year and almost six hundred thousand deaths. The number of cancer deaths worldwide per year is estimated to be about eight million, three million of which occur in developed countries where patients have been treated.

Ideally, biomarkers exist that (i) provide early detection of all solid tumors, particularly for at risk groups (e.g., smokers for lung cancer), (ii) confirm signs of other cancer, such as high PSA for prostate cancer, and/or (iii) provide early detection of cancer recurrence.

Oncologists need to know how to best treat newly diagnosed cancer patients. Current test criteria are tissue biopsies, which are used to determine cancer subtypes because therapeutic drugs are usually effective only for a particular subtype. Biopsy methods vary by location, but are invasive and can be dangerous.

To monitor treatment, oncologists need to know how well the drug is acting on the patient, whether the dose should be adjusted, and whether the disease is spreading or responding to the drug. Common methods of answering these questions are x-ray Computed Tomography (CT) scanning and Magnetic Resonance Imaging (MRI), both of which are expensive. Furthermore, these methods do not provide the necessary information until the tumor size has significantly changed.

90% of cancer patients die from metastases, but not from primary tumors. The metastatic process involves tumor cells that break away from the primary cancer (a solid tumor of epithelial cells) and enter the bloodstream. These detached cancer cells are called Circulating Tumor Cells (CTCs). CTCs have the potential to be used as a tool to determine therapy, monitor treatment, determine relapse, and provide prognostic information for survival. However, CTCs cannot be continuously collected from blood even in stage III and IV cancers.

In the present disclosure, a cell type is presented that is more consistently found in the blood of patients with solid tumors from stage I to IV. These cells are macrophage-like cells that contain the same tumor markers as the primary tumor, and thus they are referred to herein as circulating cancer-associated macrophage-like Cells (CAMLs).

CTCs and CAMLs can be found from the same patient sample at the same time by size exclusion methods, for example, by microfiltration methods. The microfilter may be formed of pores large enough to let all red blood cells and most white blood cells pass, but retain larger cells such as CTCs and CAMLs. Size exclusion methods have also been implemented with microfluidic chips.

CAMLs have many clinical uses when used alone. Furthermore, CAMLs can be combined with other markers such as CTCs, free DNA in blood, and free proteins in blood to further improve the sensitivity and specificity of diagnosis. This is particularly true for CAMLs and CTCs, as they can be isolated and identified at the same time.

Circulating tumor cells

CTCs of many solid tumors express many Cytokeratins (CK). CK 8, 18 and 19 are the most commonly used in diagnostics, but the examination need not be limited to these markers. The surface of solid tumor CTCs typically expresses epithelial cell adhesion molecule (EpCAM). However, this expression is not uniform or consistent. CTC does not express any CD45 as it is a leukocyte marker. In assays to identify tumor-associated cells, such as CTCs and CAMLs, it is sufficient to use antibodies against markers associated with solid tumors, such as CK 8, 18 and 19, or antibodies against CD45 or DAPI. In combination with the presence of morphological staining, pathologically-definable CTC (PDCTC), apoptotic CTC and CAML (Adams, D. L. et al), cell count characteristics of circulating tumor cells captured by microfiltration and their association with CellSearch can be identified^®Relevance of CTC assay (Cytometric characterization of Circulating Mobile Cells captured by microscopy and correlation to the cell search)^® CTC test)。Cytometry Part A 2015；87A:137-144)。

PDCTC of solid tumors express CK 8, 18, and 19 and can be identified by:

"cancer-like" nuclei were stained with DAPI. The nuclei are usually large, with a dot pattern. Except when the cell is dividing. The core may also be concentrated.

Expression of one or more of CK 8, 18 and 19; CTCs from epithelial cancers typically express at least CK 8, 18, and 19. Cytokeratins have a filamentous pattern.

Lack of expression of CD 45.

Apoptotic CTCs from CK 8, 18 and 19 expressing cancers are identified by the following features:

degraded core.

Expression of one or more of CK 8, 18 and 19; the pattern of cytokeratins is without filaments, but rather appears as fragments in the formation of spots.

Lack of expression of CD 45.

Apoptotic CTCs of the invention of cytokeratin-expressing solid tumors thus include those CTCs having 1, 2, or 3 of the following characteristics: (a) a degraded core; (b) expression of one or more of cytokeratins 8, 18 and 19 and wherein the cytokeratins are fragmented in the formation of spots; and (c) a CD45 negative phenotype.

The detection of many carcinomas, sarcomas and melanomas can be carried out by identifying a number of other markers. For example, CTCs from Renal Cell Carcinoma (RCC) and sarcoma express vimentin. CTCs from bladder cancer typically express uroplakin, while CK 8, 18, and 19 are weak. It is possible to stain cells for many different markers of interest.

CTCs of the invention may also be identified based on one or more of the following characteristics: (i) the number of CTCs; (ii) the number of WBCs bound to CTCs; (iii) the state of the core; (iv) the extent of cytokeratin 8 expression; (v) the degree of cytokeratin 18 expression; (vi) the extent of cytokeratin 19 expression; (vii) the degree of EpCAM expression; (viii) the degree of vimentin expression; (ix) the degree of PD-L1 expression; (x) The degree of uroplakin expression; (xi) Cytokeratin morphology; (xii) The location of the marker (the location marker is present in CTCs, e.g., cytoplasmic versus nuclear, and can vary at different time points); and (xiii) intensity of marker staining. The number of CTC characteristics used in the method of the invention may be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 or all 13.

Circulating cancer-associated macrophage-like Cells (CAML)

The features of CAMLs are identified as having one or more of the following:

CAMLs have large atypical nuclei; multiple individual nuclei can be found in CAMLs, although enlarged fusion nuclei are common. The size range of diameters of CAML nuclei is generally from about 10 μm to about 70 μm, more commonly in the range from about 14 μm to about 64 μm.

For many cancers, CAMLs express cancer markers for the disease. For example, CAMLs associated with epithelial cancers may express CK 8, 18, or 19, vimentin, and the like. The label is typically diffuse or associated with vacuoles and/or ingested material. The staining pattern of any label spreads almost uniformly throughout the cell. For sarcomas, neuroblastomas and melanomas, other cancer-associated markers may be used in place of CK 8, 18, 19.

CAMLs can be CD45 positive.

CAMLs are large, with diameter sizes from about 20 microns to about 300 microns.

CAMLs are found in a number of unique morphological shapes, including spindle, tadpole, circle, oval, two legs, more than two legs, thin legs, or amorphous shapes.

CAMLs typically have diffuse cytokeratins.

If the CAMLs express EpCAM, then EpCAM typically spreads throughout the cell, or is associated with vacuoles and/or ingested material, and is dispersed almost uniformly throughout the cell, but not all CAMLs express EpCAM, as some tumors express very low or even no EpCAM.

If the CAMLs express the marker, the marker will typically diffuse throughout the cell, or be associated with the vacuole and/or ingested material, and will be dispersed almost uniformly throughout the cell, but not all CAMLs will express the same marker with equal intensity.

CAMLs express markers that correlate with markers of tumor origin; for example, if a tumor is of prostate cancer origin and expresses PSMA, CAMLs obtained from that patient also express PSMA. As another example, if the primary tumor is of pancreatic cancer origin and expresses PDX-1, CAMLs from that patient will also express PDX-1. If CTCs of primary tumor or cancer origin express CXCR-4, CAMLs from the patient also express CXCR-4.

If CTCs of primary tumor or cancer origin express biomarkers for drug targets, CAMLs express markers associated with the markers for the drug targets. An example of a biomarker for immunotherapy is PD-L1.

CAMLs express monocyte markers (e.g., CD11c, CD14) and endothelial markers (e.g., CD146, CD202b, CD 31). CAMLs also have the ability to bind Fc fragments.

CAMLs of the invention thus include those CAMLs having 1, 2, 3, 4 or 5 of the following features: (a) large atypical nuclei having a size of about 14-64 μm; (b) expression of one or more tumor-associated cancer markers, wherein the markers are diffuse, or associated with vacuoles and/or ingested material; (c) a cell size ranging from about 20 microns to about 300 microns; (d) a morphological shape selected from spindle, tadpole, round, oval, one or more legs, pinky, and amorphous; and (e) a CD45 positive phenotype. CAMLs of the invention also include those having 1, 2, 3, or 4 additional features below: (f) expression of EpCAM or vimentin with nearly uniform distribution, diffusion; (g) expression of one or more markers of the primary tumor; (h) expression of the myeloid CD14 marker; (i) expression of the monocyte CD11C marker; and (j) expression of endothelial CD146, CD202b, and CD31 markers. In a particular aspect, the CAMLs of the present invention have each of the additional features (f) - (j).

CAMLs of the present invention can also be characterized based on one or more of the following features: (i) number of CAMLs; (ii) average size of CAMLs (CAML cells range in size from about 20 microns to about 300 microns in diameter); (iii) average size of CAML nuclei (CAMLs have large atypical nuclei about 14-64 μm in size in diameter); (iv) morphological shape of CAMLs (CAML shape includes spindle, tadpole, circle, ellipse, two legs, more than two legs, thin legs, or amorphous); (v) a CD14 positive phenotype; (vi) the extent of CD45 expression; (vii) the degree of EpCAM expression; (viii) the degree of vimentin expression; (ix) the degree of PD-L1 expression; (x) The extent of monocyte CD11C marker expression; (xi) The degree of endothelial CD146 marker expression; (xii) The degree of endothelial CD202b marker expression; (xiii) The degree of endothelial CD31 marker expression; (xiv) The location of the marker (the location marker appears in the CAML, e.g., cytoplasm versus nucleus, which may vary at different time points); (xv) The presence of one or more markers associated with cancer in CAMLs, wherein the markers are diffuse, or associated with vacuoles and/or ingested material (e.g., for epithelial cancers, the markers are cytokeratins 8, 18, and 19); and (xvi) intensity of marker staining. The number of CAML features used in the method of the invention may be 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 or all 16.

In some cases, staining CAMLs by H & E or other colorimetric stains may be most appropriate.

Bag of figure 1Group diagrams of CAMLs showing many different CAML morphologies and signal changes from independent prostate, breast and pancreatic cancer patient samples are included (Adams, D. et al, Circulating giant macrophages as potential biomarkers of solid tumors (Circulating giant macrophages a potential biomarker of solid tumors).PNAS2014, 111(9):3514-3519): (FIG. 1A) pancreatic cancer, (FIG. 1B) breast cancer, (FIG. 1C) breast cancer, (FIG. 1D) breast cancer, (FIG. 1E) prostate cancer, (FIG. 1F) pancreatic cancer, (FIG. 1G) pancreatic cancer, (FIG. 1H) prostate cancer, and (FIG. 1I) prostate cancer. Examples of morphological changes are as follows: amorphous (fig. 1A), oval (fig. 1B and 1G), spindle (fig. 1C, 1F, 1I, 3, 5, 6), round (fig. 1D), and tadpole (fig. 1E and 1H). The color difference occurs due to different degrees of protein expression based on antibody reactions with EpCAM, cytokeratin and CD 45.

Fig. 2-13 show CAMLs stained with DAPI, CD10, vimentin, and CD45, where (fig. 2A) the pictures show the combined microscope images DAPI (blue), CD10 (green), vimentin (red), and CD45 (purple), (fig. 2B) the pictures show the combined microscope images DAPI (white), CD10 (green), vimentin (red), and CD45 (purple), (fig. 2C) the pictures show DAPI (white), (fig. 2D) the pictures show CD10 (white), (fig. 2E) the pictures show vimentin (white), and (fig. 2F) the pictures show CD45 (white). The picture with white nuclei (fig. 2B) provides better image quality for some cells. Those cells have the properties of CAMLs described in the preceding paragraphs. The choice of staining was chosen because the source of the cells was renal cancer patients.

FIGS. 2A-2F show DNA material phagocytosed at the end of the upper leg. FIGS. 3A-3F show CAMLs in the process of phagocytosis, where the DNA material is already in the CAMLs and some of the disintegrated cytoplasm of the cells remains partially outside the CAMLs. FIGS. 4A-4F show CAMLs during phagocytosis of lysed cellular material. This is most evident in the vimentin channel. Fig. 5A-5F show CAMLs with 4 phagocytosed CD45 positive leukocytes. Fig. 6A-6F show CAMLs with two phagocytosed CD45 positive leukocytes. FIGS. 7A-7F appear to show CAMLs during cleavage. FIGS. 8A-8F show two similar side-by-side CAMLs, suggesting that the two cells may be from the same source. FIGS. 9A-9F show another example of two similar side-by-side CAMLs.

FIGS. 10-12 show additional morphologies of the unidentified CAMLs in FIG. 1. FIGS. 10A-10F show CAMLs with two legs on the left side of the cell. FIGS. 11A-11F show CAMLs with two legs on the same side. FIGS. 12A-12F show CAMLs with one leg on the right and two legs on the left of the nucleus. FIGS. 13A-13F show CAMLs with very thin legs and large single nuclei. FIGS. 14A-14F show CAMLs found in patients with HSV-2 virus infection.

Immune response in the body to CTC-T-cells bound to CTC

When tumor cells enter the bloodstream, CTCs will be attacked by T-cells, resulting in the death of the tumor cells. When this occurs, one or more T-cells will bind to CTCs, leading to the death of CTCs and eventual degradation of CTCs. T-cells are a subset of leukocytes. The CD45 marker stains WBCs and is not specific for T-cells. T-cells can be distinguished from granulocytes by the morphology of the nucleus. T-cells have a single nucleus that is approximately circular and less than 8 microns. Filtering the blood may capture leukocytes (WBCs) bound to CTCs. The presence of WBCs bound to CTCs in the blood is indicative of both the presence and the ability of the body to eliminate solid tumors. Determination of the number of T-cells bound to CTCs can thus be used for diagnosis.

When tumor cells and T-cells are contacted, the labels in the two cells can be exchanged. Fig. 15-18 show WBCs bound to CTCs found in blood of breast cancer patients. Markers for breast cancer patients are DAPI, CK 8, 18 and 19, EpCAM and CD 45. Fig. 15-16 show that CTCs are apoptotic with CK 8, 18, and 19 degraded to spots. Figure 18 shows more degraded CTCs without cytoplasm, missing both the CK and EpCAM markers. It is often observed that nuclei of WBCs and CTCs attract each other as shown in fig. 16.

FIGS. 19-21 show WBCs bound to CTCs found in blood of bladder cancer patients. Markers for patients with bladder cancer are DAPI, CK 8, 18 and 19, EpCAM and CD 45. In fig. 19E, EpCAM was degraded into spots. The cytoplasm of WBCs (marked in fig. 19A) and CTCs are present during merger with EpCAM surrounding WBCs. WBCs also express CD 45. FIGS. 20A-20F show that CTCs bound to WBCs that are still relatively intact. Fig. 21A-21F show cytoplasmic-free naked CTC nuclei and WBCs (labeled in fig. 21A), which still express CD45, but are much weaker than WBCs that do not bind to CTCs (not labeled in fig. 21A).

FIGS. 22-28 show WBCs bound to CTCs found in blood of renal cancer patients. Markers used for these patient samples were DAPI, CD10, vimentin, and CD 45. Figures 22A-22F show CTCs from mesenchymal kidney cancer with highly expressed vimentin. It binds tightly to WBCs. Figures 23-28 show WBCs bound to CTCs found in blood of non-mesenchymal renal cancer patients expressing lower levels of vimentin than shown in figure 22. The nuclei and cytoplasm of WBCs and CTCs attract each other. CD10, vimentin, and CD45 markers all became very weak after WBCs bound to CTCs. The amount of cytoplasm decreases and eventually can be lost in its entirety.

Frequency of CTC and CAML in blood of cancer patients

PDCTC is rarely found in early stage cancers. Even though PDCTCs are more frequently found in stage III and IV breast and prostate cancer patients, they may be found less frequently in most other solid tumors. As an example, 105 cancer patients (breast cancer (n =34), prostate cancer (n =25), pancreatic cancer (n =39) and lung cancer (n =7)) and 30 healthy controls were analyzed. Figure 29 shows that PDCTC and CAML were not found in the blood of healthy controls. In contrast, CAMLs are found in 98 of 105 cancer patients. The percentage of patients with PDCTC and CAML was 53% and 93%, respectively. The cancer stages of 105 cancer patients were as follows: stage I (n =46), stage II (n =18), stage III (n =11), and stage IV (n = 30). Figure 30 shows the percentage of stage I, II, III and IV patients with CAMLs is 87%, 100%, 91% and 97%, respectively. CAML was found to be more common than PDCTC. Patient samples from 12 different solid tumors were analyzed: breast, prostate, pancreatic, lung, colorectal, uterine, neuroblastoma, esophageal, renal, bladder, sarcoma and ovarian cancer. CAMLs are found in all those types of cancer (data not shown).

CAML number varies based on therapy

Of the 105 patients mentioned above, 44 patients received no treatment, 12 received target therapy and 49 received chemotherapy. Follow-up screening was performed to detect CAMLs in patients after treatment was completed. CAML numbers appear to depend on the type of treatment, as shown in figure 31. The number of CAMLs in patients receiving chemotherapy is much higher than in patients not receiving treatment or targeted therapy.

Relationship of CAML number to staging and disease progression

The number of CAMLs in patients undergoing chemotherapy was only weakly correlated with the stage of cancer at the time of pre-treatment clinical assessment, fig. 32, and highly correlated with the stage after pathology confirmation, fig. 33A. For patients undergoing chemotherapy, CAML numbers correlate exponentially with the following final pathological confirmation: stage I (3.2), stage II (7.1), stage III (14.6), stage IV (35.1); r²=0.99。

FIG. 33B analyzes CAML numbers based on sizes of different stages. The later stages of CAMLs have more CAMLs with larger sizes.

Breast cancer screening

Since a high percentage of CAMLs can be found at all stages of a solid tumor, CAMLs are used as cancer screening markers to assess breast cancer. A double-blind prospective study was conducted in 41 subjects in which mammography was judged to be abnormal. Double-blind testing was performed as follows: (i) a 7.5 mL sample of peripheral blood was taken to test CAMLs and (ii) a core needle biopsy was used for tissue diagnosis. Although mammography cannot distinguish between this group of subpopulations, CAMLs exist that do distinguish between benign and malignant breast disease with a sensitivity of 90% and a specificity of 72% (data not shown).

Antibody staining and re-staining of isolated cells

Typical fluorescence microscopes typically use 4 or 5 fluorescence channels to minimize bleeding through fluorescence emission into unintended fluorescence channels. One channel is taken by DAPI to image the nucleus. Often there is a need to evaluate more than 3 markers. In view of these shortcomings, methods were developed that allow analysis of up to about 12 different markers on the same cell, which can be used in combination with each of the methods disclosed in the present disclosure. After the process of filtering and staining the cells on the filter with the first set of labels, the cells of interest are identified and imaged. To evaluate more markers on the same cells, a quenching/stripping step followed by a re-staining technique was developed. This requires the cells to be in the same position to allow re-imaging of the same cells. This may be repeated multiple times. The top row of fig. 34 shows CAML a with the following standard CTC staining: DAPI, CK 8, 18, 19, EpCAM and CD 45. The second row shows re-staining of the same cells after quenching and re-staining for the markers of interest (PD-L1, CCR, and PD-1). The third row of fig. 34 shows CAML B with standard CTC staining. The fourth row shows re-staining of the same CAML B after quenching for markers of interest PD-L1, CCR and PD-1. This re-staining method is particularly suitable for cells immobilized on a microfilter. Their positions are fixed so that they can be imaged again to evaluate different markers. CTCs and other cells on the filter can also be re-stained using this technique. This method of restaining is very useful for the analysis of cancer type, companion diagnostics, therapy response, cancer screening, and a variety of research applications.

Single cell molecular analysis using CAML and CTC

Molecular analysis of CAMLs and CTCs can potentially be used to determine cancer typing for gene mutations, translocations and amplifications by various PCR analyses, microarrays, FISH analyses and sequencing. Single cell molecular analysis is becoming more common and single cell analysis of CAMLs is of particular importance. Some assays require more than one nucleus and/or cell to reduce error. The invention thus includes methods of molecular analysis of individual CAML cells, wherein individual CAML cells are obtained and molecular analysis is performed on the individual cells. There is no limitation on the particular type of molecular analysis that can be performed on a single cell, and such methods include, but are not limited to, nucleic acid sequencing, northern blot analysis, and southern blot analysis.

Methods of collecting CTCs and CAMLs using microfiltration devices are described. For such applications, the cells need to be easily removed from the filter, whereas for re-staining purposes the cells need to be left on the filter instead. An important step to allow cell removal is to coat the filter to prevent cell adhesion, for example with Fetal Bovine Serum (FBS) or Bovine Serum Albumin (BSA). Other coatings that prevent cell adhesion may also be applied. The sample flows through the filter to collect cells larger than the well. There are two methods of collecting cells of interest. The method comprises the following steps: removing the filter from the filter holder and placing it in a dish or slide with cells thereon and covering it with a suitable liquid, such as PBS; cells can be removed directly from the filter using a micromanipulator. The method 2 comprises the following steps: a syringe filled with PBS was attached to the bottom of the filter with the cell clip and the cells were washed back from the filter. The cells can be concentrated by centrifugation and the supernatant removed. The cells need to be stained in order to be able to be observed under a microscope. One non-limiting choice of staining is fluorescent intercalating dyes. Another example is staining for cell surface markers such as EpCAM, CD45 and/or other markers. There are a variety of methods for removing cells of interest from the dish, such as with a micromanipulator, or a device such as cellcolor and others.

Companion diagnostics

CAMLs can be used as a tissue source for companion diagnostics to determine the specific drugs prescribed to a patient. Current companion diagnostics utilize tissue biopsy to label stain drug targets, FISH analysis, and other molecular analyses to look for gene mutations, amplifications, or translocations by PCR, microarray, sequencing, and the like. Examples of conventional companion diagnostics using tissue biopsy are FISH amplified against HER2, FISH directed against ALK translocation, PD-L1 in tissue, AR and ER in tissue, etc. Sometimes there is not enough tissue, or no tissue at all, to evaluate a wide variety of drugs. CTCs and CAMLs can be harvested repeatedly and used to replace tissue biopsies. The same samples can also be re-stained repeatedly to evaluate the efficacy of multiple drugs.

Monitoring therapeutic response

Liquid cell biopsy provides a minimally invasive method to monitor the patient's response to treatment. The efficacy of cancer treatment can be monitored using the following methods, including:

(a) monitoring changes in the number of CAMLs and CTCs from the same subject at different time points after treatment;

(b) monitoring changes in CAML and CTC size at different time points;

(c) monitoring the intensity changes of the markers in CAMLs and CTCs at different time points; and

(d) changes in the position of markers (cytoplasmic versus nuclear) in CAMLs and CTCs were monitored at different time points.

As an example of the association with chemotherapy, figure 31 shows that chemotherapy responders appear to show an increase in CAML shortly after chemotherapy treatment. In contrast, CAMLs from the target therapy did not show an increase over untreated controls.

In a second example of radiotherapy, the top row of FIG. 35 shows CAMLs stained for DAPI, PD-L1, RAD50, and PD-1 from lung cancer patients prior to radiotherapy. The bottom two rows show two different CAMLs that also stained DAPI, PD-L1, RAD50, and PD-1 after radiation therapy. RAD50 migrating to the site of DNA damage is in the nucleus.

This alteration of RAD50 is also seen in CTC. The third example incorporates re-staining to check the effectiveness of radiotherapy. The top row of figure 36 shows CTC clusters from lung cancer patients after treatment with radiotherapy using standard CTC dyes (DAPI, CK 8, 18, 19, EpCAM and CD 45). Bottom row shows quenching and labeling associated with radiotherapy and immune response: identical CTC clusters after re-staining with PD-L1, RAD50 and PD-1.

A fourth example is related to immunotherapy. Immunotherapy, which enables the body to kill tumors, has shown surprising results for many types of cancer. Examples of immunotherapy drugs are antibodies against PD-L1 on the surface of tumor cells; while another sample of immunotherapy drugs is antibodies directed against PD-1 on the surface of killer T-cells. Both types of immunotherapy drugs enable killer T-cells to kill tumor cells in some patients. FIG. 37 shows an example of the number of CAMLs collected over 4 time intervals extending about 2-3 weeks. Treatment of PD-1 was at dates T1 and T3 after providing blood samples for liquid cell biopsy. A decrease in the number of CAMLs after treatment may be an indication that the patient is not responding to treatment. FIG. 38 shows the corresponding range of CAMLs' sizes as they also decrease. This information suggests that tumor debris may be reduced in the blood by the treatment, suggesting that the patient may not respond to the treatment. FIG. 39 is a CAML before T1 showing very bright PD-L1. The signal of PD-L1 on background noise is about 8 times that of background noise. FIG. 40 is a CAML collected at T1 immediately prior to treatment. The PD-L1 signal is now weak. The signal of PD-L1 was less than 2 times background noise above background noise, indicating a potential adverse response. FIG. 41 is a CAML at T3. The PD-L1 signal is now very weak. The signal of PD-L1 on background noise is less than 1 times background noise; this is an indication of the absence of a drug target, such as PD-L1.

The fifth example relates to monitoring the success of the surgery. In Adams et al (Circulating giant macrophages as a biomarker of potential solid tumors).PNAS2014, 111(9):3514 and 3519) is shown in FIG. S5. The continued presence of CAMLs in the patient's blood may indicate that the cancer may not be completely eradicated.

Capture of CAMLs and CTCs

Cells that are larger and/or less suitable than other cells present in the body fluid can be collected by filtering the body fluid. For example, target cells indicative of a condition, e.g., CAMLs and CTCs, can be collected by passing body fluid through a filter that has openings that are too small to pass through the target cells, but large enough to pass other cells. Once collected, any number of target cells can be analyzed. Such analysis may include, for example, identification, enumeration, feature expression of markers, obtaining molecular analysis, and/or culturing collected cells.

CAMLs, pathologically-definable CTCs, and apoptotic CTCs are larger than erythrocytes and most leukocytes. The use of precision microfilters with precise pore size and void distribution has been shown to provide high capture efficiency and low standard deviation for these cells. CellSieve^TMA microfilter (Creatv MicroTech) is an example of a precision microfilter. CellSieve^TMMicrofilters are transparent and non-fluorescent, making them ideal for microscopic imaging analysis. Pore sizes of 7-8 microns eliminate all red blood cells and 99.99% white blood cells. Methods of making microfilters that produce uniform pore size and distribution are described in WO 2011/139445 and PCT/US12/66390, both of which are incorporated by reference in their entiretyIncorporated herein. Microfilters made with the trace etch process have overlapping randomly positioned pores, which effectively create large pores. They may lose some CAMLs and CTCs.

In addition to microfiltration, there are many other methods of capturing CTCs, and some can also be employed to capture CAMLs. They are generally classified into the following categories:

since CAMLs are larger than most blood cells, many size-based methods are suitable for capturing CAMLs. A microfilter with 7-8 micron pores is ideal for capturing CAMLs and CTCs simultaneously. If only CAMLs are of interest, not CTCs, the pore size can be expanded to about 15-20 microns. The larger pore size will eliminate most of the WBC contaminants on the filter.

Immunocapture uses ferrofluids, magnetic beads, microfluidic chips, etc., coated with antibodies for selection of CAMLs, or exclusion of other cells.

Erythrocyte lysis can also be used to collect CAMLs. The resulting sample volumes need to be placed on multiple slides.

Leukocyte depletion.

•FICOLL。

Electrophoresis.

Dielectrophoresis.

Flow cytometry.

Sorting, selecting, grouping, trapping, concentrating large cells or eliminating small cells by size, microfluidic chip technology utilizing a variety of biological and physical principles is also suitable.

Filtration is the best method to identify WBCs bound to CTCs. Because both WBCs and CTCs lose their markers and lose cytoplasm, immunocapture and flow cytometry are less suitable methods to isolate them.

In related aspects and embodiments of the invention, CTCs and WBCs bound to CTCs may be detected alone or in combination with detection of CAMLs. Such detection may be simultaneous or sequential and may utilize the same or different methods. For example, simultaneous detection using a microfilter having a pore size selected for both cell types may be used. Suitable microfilters may have a variety of pore sizes and shapes. Microfilters having pores with sizes of about 7-8 microns are acceptable and include round, rectangular and racetrack pore shapes. Microfilters with circular holes of about 7-8 microns in size are particularly preferred when polymeric microfilters are used. In a preferred aspect, the microfilter has a precise pore geometry and a uniform pore distribution.

CAML separation and identification for economic savings

Methods of isolating CAMLs and/or CTCs from a biological sample and counting the isolated cells using a camera, such as a cell phone camera, are embodiments of the invention. Methods utilizing cameras, such as those on cell phones, can be used in those cases where the equipment and reagents required to analyze CAMLs and/or CTCs in detail by marker staining and visualization are not available. The ability to count CAMLs and/or CTCs based on colorimetric staining may be sufficient for certain applications. When there is a lack of resources in a community, cancer is often diagnosed at an advanced stage, which is reflected in limited treatment options and pessimistic consequences. Methods of providing low cost diagnostics based on the enumeration of CAMLs and/or CTCs in a sample may take one or more of the following concepts.

(i) A low-cost filter with a pore size of 15-20 microns is used.

(ii) Blood samples are filtered by hand aspiration or low cost pumps.

(iii) Colorimetric staining was used to visualize CAMLs and/or CTCs.

(iv) The cells were imaged using a cell phone camera with/without a small portable lens, or various white light microscopes with 10x or less magnification.

The large pore size of the filter will reduce WBC contamination. Manual suction will reduce costs. Colorimetric staining is low cost. CAMLs are observable by cell phone cameras due to the large size of the cells.

Embodiments of the invention

As set forth above, the unique features of CAMLs and CTCs described herein make them well suited for use in clinical methods, including methods of screening and diagnosing diseases such as cancer, monitoring therapy, monitoring disease progression and recurrence.

The present invention thus relates in a first embodiment to a method of screening for cancer in a subject comprising detecting CAMLs in a biological sample obtained from the subject. In particular aspects, when CAMLs are detected in a biological sample, the subject is identified as potentially having a carcinoma, sarcoma, neuroblastoma, melanoma, or other solid tumor. In other aspects, when CAMLs are detected in the biological sample, the subject is identified as having a carcinoma, sarcoma, neuroblastoma, melanoma, or other solid tumor. In certain aspects, the methods encompassed by this embodiment also include detecting Circulating Tumor Cells (CTCs) and T-cells bound to tumor cells in the biological sample. In a particular aspect of such a first embodiment, the subject is a subject suspected of having cancer.

After the CAMLs, CTCs or T-cells bound to tumor cells are found, it is possible to identify the type of tumor by staining and, in some cases, re-staining these cells with markers associated with the tumor type. National Cancer Institute tumor marker facetseet lists a number of Cancer markers (see the NCI website with URLs ending with "Cancer. gov/Cancer/facial/detection/tumor-markers" and "Cancer. gov/about-Cancer/diagnosis-stage/diagnosis/tumor-markers-skin # q 5"). Cancer markers are not limited to this list. Several examples of markers listed below can be used to stain CAMLs and CTCs to provide a preliminary indication of cancer type:

BRAF mutation V600E: cancer type: cutaneous melanoma and colorectal cancer

CA15-3/CA 27.29: cancer type: breast cancer

CA 19-9: cancer type: pancreatic cancer, gallbladder cancer, bile duct cancer, and gastric cancer

CA-125: cancer type: ovarian cancer

Carcinoembryonic antigen (CEA): cancer type: colorectal and breast cancer

Cytokeratin fragment 21-1: lung cancer

Estrogen Receptor (ER)/Progestin Receptor (PR): cancer type: breast cancer

HE 4: cancer type: ovarian cancer

HER 2/neu: cancer type: breast, stomach and esophagus cancer

KIT: cancer type: gastrointestinal stromal tumor and mucosal melanoma

Prostate-specific antigen (PSA) and PSMA: cancer type: prostate cancer

Thyroglobulin: cancer type: thyroid cancer

5-protein tag (Ova 1): cancer type: ovarian cancer

The choice of the marker is not limited to this list.

To identify a type of cancer, one marker may be sufficient for certain types of cancer. To screen more than one type of cancer, such as prostate, colorectal, and lung cancers in men, in the same blood sample, it is desirable, after identifying the CAMLs and CTCs of interest, to re-stain the CAMLs and CTCs with cancer markers specific for those types of cancer. The following is an illustration of the analysis of CAMLs and CTCs for cancer screening for up to 4 types of epithelial cancer using the microfiltration method:

collecting the blood.

Separating CTCs and CAMLs on the microfilter.

Staining cells with DAPI, CK 8, 18, 19, CD14/CD45, and a marker for one type of cancer.

Imaging cells using fluorescence microscopy and identifying CAMLs and CTCs.

Quenching fluorescent dyes in CAMLs and CTCs.

Re-staining cells with DAPI and 3 additional markers of interest.

Re-imaging new markers in the same CTCs and CAMLs previously imaged.

Determining the type of cancer based on the marker.

CT scans of the lungs can show unusual findings down to a size of 4 mm. It is now the recommended screening method for lung cancer. To verify that the primary result is lung cancer, a tissue biopsy is required. Tissue biopsy of the lungs is extremely challenging and it is associated with a higher risk of adverse effects. The presence of CAMLs with associated lung cancer markers such as cytokeratin fragment 21-1, and other markers, can be used to provide a non-invasive step in determining lung cancer.

For the population carrying the BRAC1 and BRAC2 mutations, they have a high probability of suffering from breast and/or ovarian cancer. Blood tests for CAML can be performed, including markers for CA125, Ova1 for ovarian cancer, and CEA, CA15-3/CA27.29, ER, PR, and HER2 for breast cancer.

To screen humans for the first 4 types of cancer, one set of possible choices for markers could be PSMA for prostate cancer, CEA for colorectal cancer, cytokeratin fragment 21-1 for lung cancer, and PDX-1 for pancreatic cancer.

The program and markers may vary depending on CAML and CTC isolation methods, microscopy, type of cancer of interest, and the like. In summary, it is possible to screen for a particular cancer, several cancers, or any solid tumor in the class of carcinomas, sarcomas, neuroblastomas, and melanomas. The labels need not be limited to those described herein.

In a second embodiment, the invention relates to a method of diagnosing cancer in a subject comprising detecting CAMLs in a biological sample obtained from the subject, wherein when CAMLs are detected in the biological sample, the subject is diagnosed with cancer. Identification of a particular type of cancer can be performed by standard methods, such as staining for cancer markers. Identification of a particular type of cancer can also be performed by staining for cancer markers and then re-staining the same cells for additional markers. In certain aspects, the methods encompassed by this embodiment also include detecting CTCs in the biological sample, wherein when CAMLs and CTCs are detected in the biological sample, the subject is diagnosed with cancer. In certain aspects, the methods encompassed by this embodiment also include detecting CTCs bound to WBCs and/or detecting CTCs bound to apoptosis of WBCs in the biological sample, wherein when CTCs bound to WBCs and/or CTCs bound to apoptosis of WBCs are detected in the biological sample, the subject is diagnosed with cancer.

In a third embodiment, the invention relates to a method of detecting cancer recurrence in a subject, comprising detecting CAMLs in a biological sample from a subject who has been previously treated for cancer, wherein when CAMLs are detected in the biological sample, cancer recurrence is detected. Identification of a particular type of cancer can be performed by standard methods, such as staining for cancer markers. Identification of a particular type of cancer can also be performed by staining for cancer markers and then re-staining the same cells for additional markers. In certain aspects, the methods encompassed by this embodiment also include detecting CTCs and/or WBCs bound to CTCs in the biological sample, wherein when CAMLs, CTCs, and WBCs bound to CTCs are detected in the biological sample, cancer recurrence is detected. To identify recurrence of specific cancer, staining should specifically include markers associated with remission of cancer.

In a fourth embodiment, the invention relates to a method of confirming a diagnosis of cancer in a subject, comprising detecting CAMLs in a biological sample obtained from a subject diagnosed with cancer, wherein when CAMLs are detected in the biological sample, a diagnosis of cancer in the subject is confirmed. Most patients can avoid invasive corroboration by tissue biopsy; tissue biopsy is only necessary when CAMLs are present. In certain aspects, the methods encompassed by this embodiment also include detecting CTCs and/or WBCs bound to CTCs in the biological sample, wherein when one or more of CAMLs, CTCs, and WBCs bound to CTCs are detected in the biological sample, a diagnosis of cancer in the subject is confirmed. In particular aspects, the preliminary cancer diagnosis is by mammography, PSA testing, the presence of CA125, CT, MRI, or PET imaging. In a particular aspect, the subject is suspected of having cancer. Identification of a particular type of cancer can be performed by standard methods, such as staining for cancer markers. Identification of a particular type of cancer can also be performed by staining for cancer markers and then re-staining the same cells for additional markers.

In a fifth embodiment, the invention relates to a method of determining the cancer stage in a subject comprising characterizing CAMLs in a biological sample obtained from a subject having cancer, wherein selected characteristics of the CAMLs are indicative of the cancer stage of the subject. Identification of a particular type of cancer can be performed by standard methods, such as staining for cancer markers. Identification of a particular type of cancer can also be performed by staining for cancer markers and then re-staining the same cells for additional markers. In certain aspects, the methods encompassed by this embodiment also include characterizing CTCs in the biological sample, wherein selected characteristics of the CAMLs and CTCs are indicative of the cancer stage of the subject. In certain aspects, prior to characterization, CAMLs and/or CTCs are collected from a biological sample. The number of CAMLs in stage III and IV cancers is typically 5 or more in a 7.5 ml volume of peripheral blood sample. The percentage of CAMLs with a diameter size greater than 40 microns is about 70% for stage III patients and about 80% for stage IV patients.

In a sixth embodiment, the invention relates to a method of monitoring the efficacy of a cancer treatment, comprising (a) determining a characteristic of one or more selected CAMLs in a biological sample from a subject undergoing a cancer treatment, and (b) comparing the determined value of the one or more selected characteristics determined in (a) to a determined value of the same characteristic determined in a similar biological sample from the same subject at one or more time points prior to, during, or after completion of the treatment, wherein a change in the value of the one or more determined values is indicative of the efficacy of the cancer treatment in the subject. In certain aspects, the methods encompassed by this embodiment also include (a) determining one or more selected characteristics of CTCs in the biological sample, and (b) comparing the determined value of the one or more selected characteristics determined in (a) to the determined value of the same characteristic determined in a similar biological sample obtained from the same subject at one or more time points prior to, during, or after completion of the treatment. In certain aspects, prior to characterization, CAMLs and/or CTCs are collected from a biological sample.

In certain aspects, the selected features of the CAMLs are one or more of: (i) changes in CAML numbers from the same subject at different time points after treatment; (ii) a change in average CAML size at different points in time; (iii) a change in label intensity in CAMLs at different points in time; and (iv) the change in marker position in CAML from nuclear to cytoplasmic or vice versa.

In certain aspects, the characteristics of the selected CTC are one or more of: (i) a change in the number of CTCs in the biological sample at different time points after treatment; (ii) changes in marker intensity in CTCs at different time points; (iii) a change in the location of the marker from nucleus to cytoplasm or vice versa; (iv) a change in the number of WBCs bound to CTCs in a biological sample; and (v) a change in the number of WBCs bound to CTCs in the biological sample at different time points after treatment.

The skilled artisan will appreciate that a change in the number of CAMLs and/or CTCs and/or WBCs bound to CTCs will be indicative of a therapeutic effect, wherein a change in the number of CAMLs and/or CTCs and/or WBCs bound to CTCs may increase or decrease. Summary information about CAMLs, CTCs, and CTCs bound to WBCs may be used independently of each other. Summary information about CAMLs, CTCs, and CTCs bound to WBCs may also be used together.

The skilled artisan will appreciate that a change in the size of the CAMLs and/or CTCs may be indicative of the effectiveness of a treatment, wherein the change in size may be an increase or decrease in the size of the CAMLs and/or CTCs and/or WBCs bound to CTCs. The aggregated information about CAMLs and CTCs may be used independently or together.

The ability to follow CAMLs provides a new opportunity to routinely monitor necrosis and chemotherapy or radiotherapy responses. If chemotherapy fails to work, the number of CAMLs will not increase. This can be used in parallel with CTC detection. If treatment works, the pathologically-definable number of CTCs will decrease, while the number of apoptotic CTCs will increase. However, CTCs cannot always be detected. Sensitivity and specificity can be improved if CTCs are detected at the same time as CAMLs. For many cancers, there are a large number of chemotherapeutic agents. If a patient does not respond to one type of chemotherapy, the patient can quickly switch to another.

The invention also relates to methods of isolating CAMLs and/or CTCs from a biological sample and enumerating the isolated cells using a camera, such as a cell phone camera, or a white light microscope, or a camera linked to a white light microscope. Thus, in a seventh embodiment, the invention relates to a method of detecting CAMLs and/or CTCs of a biological sample, comprising obtaining a biological sample from a subject, and detecting CAMLs and/or CTCs in the sample, wherein the detecting is by a camera, a white light microscope, or a camera coupled to a white light microscope. In certain aspects, the camera is a cell phone camera. In certain aspects, the white light microscope has a magnification of 10x or less. In other aspects, cells are collected from the biological sample through a low cost filter and/or the biological sample is obtained from the subject by manual aspiration or a low cost pump. In a further aspect, colorimetric staining is used to visualize CAMLs and/or CTCs.

In an eighth embodiment, the present invention is directed to a companion diagnostic method for screening for a selected drug target marker in CAMLs and/or CTCs comprising collecting CAMLs and/or CTCs from a biological sample obtained from a subject and determining whether CAMLs and/or CTCs express or have the selected drug target marker. In certain aspects, the drug target marker is a cell surface marker, and the determining can be, for example, by staining the marker. By way of example, PD-L1 may be used as a cell surface marker for immunotherapy. In other aspects, the drug target marker is a polynucleotide. In a further aspect, the drug target marker is a gene mutation, amplification or translocation and the assay can be, for example, by FISH.

In a ninth embodiment, the invention relates to a method of diagnosing a viral infection in a subject comprising collecting CAMLs from a biological sample obtained from the subject and screening the collected CAMLs for a virus. In certain aspects, screening is performed by staining CAMLs for viral markers. In a further aspect, the screening is by molecular analysis of DNA or RNA from CAMLs.

The traditional method of virus detection is based on the presence of antibodies or viral particles in the blood. Since CAMLs phagocytose viral debris, cells infected with viruses, and cell debris containing viruses, use of CAMLs in such a manner can provide a useful tool for detecting and diagnosing viral infections. The source of viral infection that can be diagnosed using these methods is not limited and includes, for example, Human Immunodeficiency Virus (HIV), Hepatitis B Virus (HBV), Epstein-Barr virus (EBV), and the like.

Some viral infections, such as HIV and HBV, can lead to cancer. CAMLs found in the blood of subjects with such infections can be caused by viral infection or by the cancer itself. Staining for cancer markers or for viral markers can be used to provide diagnostic information. This may be a useful method for early detection of virus-induced cancer.

In related aspects and embodiments of the invention, therapies include vaccines, chemotherapy, radiation therapy, immunotherapy, targeted therapy, and combinations thereof.

In related aspects and embodiments of the invention, the biological sample may be any sample suspected of containing CTCs, WBCs bound to CTCs, and/or CAMLs. In certain aspects, the biological sample is one or more selected from the group consisting of peripheral blood, lymph nodes, bone marrow, cerebrospinal fluid, tissue, and urine. The sample may be a fresh sample or a freeze-preserved sample that has been thawed. In a preferred aspect, the biological sample is peripheral blood. In other aspects, the blood is antecubital-venous blood, inferior vena cava blood, or jugular venous blood.

Circulating monocytes have the ability to enter any tissue compartment of the body, including lymph nodes, bone marrow, most organs, and even cross the blood-brain barrier. Thus, detection of CAMLs is not limited to blood, and cells can also be found in lymph nodes, bone marrow, cerebrospinal fluid, most organs, and urine.

In related aspects and embodiments of the invention, the cancer is one or more of a solid tumor, a stage I cancer, a stage II cancer, a stage III cancer, a stage IV cancer, a carcinoma, a sarcoma, a neuroblastoma, a melanoma, an epithelial cancer, a breast cancer, a prostate cancer, a lung cancer, a pancreatic cancer, a colorectal cancer, and other solid tumor cancers. The skilled person will appreciate that the methods of the invention are not limited to a particular form or type of cancer, and that they may be practiced in conjunction with a wide variety of cancers.

Since CAMLs can be found in stage I and II cancers, CAMLs can be used as a screen for early detection of carcinomas, sarcomas, neuroblastomas, and melanomas. Cancer is a cancer of epithelial origin, particularly in high-risk patients for breast, prostate, lung, pancreatic, colorectal and other cancers. The specificity of the cancer type can be determined by re-staining various cancer site-specific markers on the same cells captured on the microfilter. Some examples are (i) the use of an antibody against PSMA to specifically identify prostate cancer, (ii) the use of an antibody against PDX-1 to specifically identify lung cancer, (iii) the use of an antibody against CA125 for ovarian cancer, and (iv) clorotoxin to identify glioma.

Similarly, when the cancer is in remission, CAMLs can be used to determine early recurrence of the cancer. Currently, CT, MRI and PET imaging are used to monitor patients for tumors, requiring that the tumor size vary significantly to notice the difference. When only slight size changes occur, the patient may thus lose valuable time to begin treatment. CAMLs, alone or in combination with CTCs, can provide early detection of cancer recurrence. Non-invasive blood testing of CAMLs and CTCs is much less costly than CT, MRI and PET imaging.

CAMLs can also potentially be used to determine cancer typing or gene mutations, translocations or amplifications. There are many cancer cell nuclei in each CAML. Thus, molecular analysis of nuclear gene mutations, gene defects, and gene translocations can provide information for determining treatment. There are drugs that specifically target certain gene mutations, translocations or amplifications. CAMLs can be used alone or in parallel with CTCs for molecular analysis.

In related aspects and embodiments of the invention, the volume of the biological sample will vary based on the source and/or identity of the sample. However, in the case of peripheral blood, the volume of blood may range from about 0.5 ml to about 50 ml, about 1 ml to about 40 ml, about 2 ml to about 30 ml, about 3 ml to about 25 ml, about 4 ml to about 20 ml, about 5 ml to about 15 ml, about 6 ml to about 10 ml, or about 7 ml to about 8 ml. Suitable volumes also include about 1, 1.5, 2, 2.5, 3, 3.5, 4, 4.5, 5, 5.5, 6, 6.5, 7, 7.5, 8, 8.5, 9, 9.5 or 10 ml. The volume of blood typically used to detect CTCs was 7.5 mL. Larger volumes of blood will provide greater sensitivity and consistency, but smaller volumes, such as 3.5 mL, may be sufficient. For various reasons, larger volumes of blood are not practical for many CTC detection methods. However, microfiltration of blood to capture CTCs and/or CAMLs allows greater suitability to increase sample size. Using CellSieve with 160,000 holes^TMA micro-filter,a blood volume of 50 mL has been shown to be successfully screened. A suitable blood volume to capture CAMLs would be 7.5 ml.

In related aspects and embodiments of the invention, the anti-cancer treatment may be one or more of chemotherapy, radiation therapy, immunotherapy, vaccine therapy, targeted therapy, and/or a combination of therapies.

In related aspects and embodiments of the invention, CAMLs are detected and/or collected using one or more methods selected from the group consisting of: size exclusion methods, immunocapture, red blood cell lysis, leukocyte depletion, FICOLL, electrophoresis, dielectrophoresis, flow cytometry and microfluidic chips, or combinations thereof. In a particular aspect, the size exclusion method comprises the use of a microfilter. Suitable microfilters may have a variety of pore sizes and shapes. When CAMLs are detected and/or collected alone, the pore size can range from about 15 microns to about 20 microns. When both CAMLs and CTCs are detected and/or collected, the pore size may range from about 5 microns to about 10 microns, preferably 7-8 microns. The larger pore size will eliminate most of the WBC contaminants on the filter. The holes may have the shape of circular, racetrack, oval, square and rectangular holes. In a preferred aspect, the microfilter has a precise pore geometry and a uniform pore distribution. In a particular aspect, CAMLs use microfluidic chips based on: sorting based on physical size; sorting based on hydrodynamic size; grouping by size, trapping, immunocapture, concentration of large cells, or elimination of small cells. In a particular aspect, CAMLs are detected and/or collected using a CellSieve ™ low-pressure microfiltration assay.

The results reported herein support the idea that CAML provides a reliable indication of the presence of cancer. The sensitivity and specificity of CAML use can be further improved in combination with the simultaneous detection of CTCs and CTCs bound to WBCs. Cancer screening is a strategy used in the human population to identify non-cognitive diseases with no signs or symptoms, as well as symptomatic diseases before symptoms occur or are not known. Also, some of the uniqueness of screening tests is that they are performed in apparently well-healthy populations. The screening test is not a diagnostic test. Diagnostic tests are procedures performed to confirm, or confirm the presence of, a disease in an individual suspected of having the disease. CAMLs can be used as cancer diagnostics to provide additional non-invasive diagnostics confirming other screening techniques, such as mammography, PSA testing, CA125 presence, CT, MRI, or PET imaging.